MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.5 nTPM
HPA Brain:51.6 nTPM
GTEx:6.5 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Pig:37.4 nTPM
Mouse:17.0 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.4
2828 Female, age 72, unknown 41.9
1833 Male, age 53, unknown 40.6
1827 Male, age 72, unknown 40.5
2219 Male, age 76, both hemispheres 39.7
2019 Male, age 18, unknown 36.1
2666 Male, age 74, left hemisphere 34.2
2586 Male, age 75, left hemisphere 33.9
1870 Female, age 42, unknown 33.8
2411 Female, age 72, unknown 32.8
1830 Male, age 51, unknown 30.8
Dorsal raphe nucleus
nTPM: 35.3
2047 Male, age 72, unknown 44.0
2750 Male, age 76, both hemispheres 41.3
2298 Female, age 72, unknown 33.2
1828 Male, age 53, unknown 30.7
2016 Female, age 72, unknown 27.5
Inferior colliculus
nTPM: 32.0
2849 Male, age 72, unknown 36.0
1848 Female, age 42, unknown 33.8
2097 Female, age 72, unknown 29.6
1890 Male, age 53, unknown 28.3
Median raphe nucleus
nTPM: 51.6
2220 Male, age 76, midline 51.6
Periaquaductal grey, anterior
nTPM: 34.5
2502 Female, age 75, unknown 35.8
1795 Male, age 51, unknown 35.5
1947 Male, age 18, unknown 32.3
Periaquaductal grey, dorsal
nTPM: 37.0
1840 Male, age 53, unknown 43.9
2464 Female, age 72, unknown 36.6
2850 Male, age 76, both hemispheres 34.4
1831 Male, age 72, unknown 33.0
Periaquaductal grey, lateral
nTPM: 32.1
2140 Male, age 76, both hemispheres 36.5
2053 Male, age 18, unknown 36.4
2272 Male, age 74, both hemispheres 23.5
Pretectal area
nTPM: 40.9
1944 Female, age 72, unknown 60.4
1816 Male, age 51, unknown 60.1
1817 Female, age 42, unknown 52.1
1815 Male, age 53, unknown 49.7
2007 Male, age 72, unknown 44.3
2667 Female, age 75, unknown 38.9
2224 Female, age 72, unknown 33.6
2316 Male, age 76, right hemisphere 30.1
2407 Male, age 75, both hemispheres 30.0
2825 Male, age 18, unknown 29.3
2273 Male, age 74, both hemispheres 21.1
Red nucleus
nTPM: 31.8
2503 Female, age 72, unknown 39.5
2785 Male, age 18, unknown 36.7
1904 Male, age 53, unknown 35.4
2588 Male, age 74, left hemisphere 34.3
2823 Male, age 76, right hemisphere 33.8
2725 Female, age 75, unknown 33.2
1821 Female, age 72, unknown 32.4
1954 Female, age 42, unknown 30.3
1865 Male, age 51, unknown 28.5
2584 Male, age 75, left hemisphere 26.1
2769 Male, age 72, unknown 26.0
2227 Male, age 72, unknown 25.6
Substantia nigra
nTPM: 33.0
1889 Female, age 72, unknown 48.1
2409 Female, age 72, unknown 38.5
1916 Female, age 42, unknown 36.4
1851 Male, age 51, unknown 34.2
2241 Male, age 72, unknown 33.5
2590 Female, age 75, unknown 31.2
2665 Male, age 74, both hemispheres 30.6
2583 Male, age 75, right hemisphere 28.8
2699 Male, age 18, unknown 28.7
1941 Male, age 53, unknown 19.9
Superior colliculus
nTPM: 38.6
2087 Female, age 72, unknown 51.3
2261 Male, age 18, unknown 45.2
1895 Male, age 76, right hemisphere 44.7
1796 Male, age 53, unknown 41.4
1913 Female, age 42, unknown 40.3
2668 Female, age 75, unknown 36.0
1839 Male, age 51, unknown 33.9
1995 Male, age 72, unknown 33.4
2587 Male, age 74, left hemisphere 31.5
2664 Male, age 75, both hemispheres 28.0
Ventral tegmental area
nTPM: 27.8
2410 Female, age 72, unknown 37.6
1915 Female, age 42, unknown 30.2
2021 Male, age 53, unknown 26.7
2218 Male, age 76, both hemispheres 26.5
1942 Male, age 51, unknown 23.6
2223 Female, age 72, unknown 22.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.5
Samples: 139

Max nTPM: 12.6
Min nTPM: 2.0
Std nTPM: 1.7
Median nTPM: 6.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 12.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 10.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 10.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 10.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 10.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 9.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 9.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 9.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 9.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 9.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 9.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.6
FF:10158-103A5 76 years, female 41.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.3
Samples: 4

Max nTPM: 40.4
Min nTPM: 16.5
Sample A Female 25.0
Sample B Female 40.4
Sample C Male 31.1
Sample D Male 16.5
Midbrain
nTPM: 28.4
Samples: 4

Max nTPM: 42.1
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 23.3
Sample C Male 42.1
Sample D Male 39.4
Periaqueductal gray
nTPM: 26.3
Samples: 3

Max nTPM: 31.4
Min nTPM: 23.3
Sample B Female 24.2
Sample C Male 31.4
Sample D Male 23.3
Superior colliculi
nTPM: 37.3
Samples: 4

Max nTPM: 51.1
Min nTPM: 22.5
Sample A Female 45.1
Sample B Female 51.1
Sample C Male 22.5
Sample D Male 30.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 18.8
Min nTPM: 13.8
Sample A Male 13.8
Sample B Male 17.8
Sample C Female 17.5
Sample D Female 18.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
73521820 Antisense, RP_051101_03_B04, Mouse strain C57BL/6J (56 days, male) 1.2
79762410 Antisense, RP_071204_04_C04, Mouse strain C57BL/6J (56 days, male) 0.7
74431426 Antisense, RP_060207_02_A03, Mouse strain C57BL/6J (56 days, male) 0.0

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