MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.0 nTPM
HPA Brain:25.9 nTPM
GTEx:8.0 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:6.5 nTPM
Mouse:2.9 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
1830 Male, age 51, unknown 27.6
2586 Male, age 75, left hemisphere 27.1
2666 Male, age 74, left hemisphere 26.1
1833 Male, age 53, unknown 24.9
2828 Female, age 72, unknown 24.9
2019 Male, age 18, unknown 24.8
1870 Female, age 42, unknown 22.8
2411 Female, age 72, unknown 22.6
1827 Male, age 72, unknown 21.1
2219 Male, age 76, both hemispheres 16.0
Dorsal raphe nucleus
nTPM: 23.5
2750 Male, age 76, both hemispheres 27.4
2016 Female, age 72, unknown 27.1
1828 Male, age 53, unknown 23.4
2047 Male, age 72, unknown 20.2
2298 Female, age 72, unknown 19.4
Inferior colliculus
nTPM: 19.0
2849 Male, age 72, unknown 20.6
1848 Female, age 42, unknown 19.8
1890 Male, age 53, unknown 19.2
2097 Female, age 72, unknown 16.3
Median raphe nucleus
nTPM: 19.3
2220 Male, age 76, midline 19.3
Periaquaductal grey, anterior
nTPM: 23.1
2502 Female, age 75, unknown 24.9
1947 Male, age 18, unknown 22.5
1795 Male, age 51, unknown 21.8
Periaquaductal grey, dorsal
nTPM: 21.5
2850 Male, age 76, both hemispheres 23.2
2464 Female, age 72, unknown 23.0
1831 Male, age 72, unknown 22.6
1840 Male, age 53, unknown 17.4
Periaquaductal grey, lateral
nTPM: 23.8
2272 Male, age 74, both hemispheres 24.3
2140 Male, age 76, both hemispheres 23.8
2053 Male, age 18, unknown 23.1
Pretectal area
nTPM: 20.5
2316 Male, age 76, right hemisphere 28.0
2407 Male, age 75, both hemispheres 23.4
2273 Male, age 74, both hemispheres 22.9
1815 Male, age 53, unknown 21.8
2825 Male, age 18, unknown 20.9
2667 Female, age 75, unknown 19.4
2224 Female, age 72, unknown 18.7
2007 Male, age 72, unknown 18.4
1817 Female, age 42, unknown 18.2
1944 Female, age 72, unknown 17.0
1816 Male, age 51, unknown 16.8
Red nucleus
nTPM: 25.9
2823 Male, age 76, right hemisphere 33.9
2769 Male, age 72, unknown 27.9
2227 Male, age 72, unknown 27.6
2584 Male, age 75, left hemisphere 27.3
1865 Male, age 51, unknown 27.0
1904 Male, age 53, unknown 26.4
2725 Female, age 75, unknown 24.8
2588 Male, age 74, left hemisphere 24.2
2785 Male, age 18, unknown 24.1
1954 Female, age 42, unknown 24.0
2503 Female, age 72, unknown 22.6
1821 Female, age 72, unknown 20.9
Substantia nigra
nTPM: 21.8
2665 Male, age 74, both hemispheres 26.0
2699 Male, age 18, unknown 25.0
2409 Female, age 72, unknown 22.7
2590 Female, age 75, unknown 22.7
1851 Male, age 51, unknown 22.3
2583 Male, age 75, right hemisphere 22.1
1941 Male, age 53, unknown 21.8
1916 Female, age 42, unknown 19.4
1889 Female, age 72, unknown 18.2
2241 Male, age 72, unknown 17.6
Superior colliculus
nTPM: 23.1
1995 Male, age 72, unknown 29.5
1913 Female, age 42, unknown 28.7
2664 Male, age 75, both hemispheres 25.0
1839 Male, age 51, unknown 22.1
2668 Female, age 75, unknown 21.9
1895 Male, age 76, right hemisphere 21.8
2087 Female, age 72, unknown 21.5
2261 Male, age 18, unknown 20.4
2587 Male, age 74, left hemisphere 20.0
1796 Male, age 53, unknown 19.7
Ventral tegmental area
nTPM: 22.0
2021 Male, age 53, unknown 25.9
2223 Female, age 72, unknown 23.7
1942 Male, age 51, unknown 22.7
2410 Female, age 72, unknown 20.0
1915 Female, age 42, unknown 19.7
2218 Male, age 76, both hemispheres 19.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.0
Samples: 139

Max nTPM: 15.0
Min nTPM: 2.3
Std nTPM: 2.6
Median nTPM: 7.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 14.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 13.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 13.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 12.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 12.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 12.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 12.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 12.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 12.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.8
FF:10158-103A5 76 years, female 27.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.4
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.2
Sample A Female 6.3
Sample B Female 7.2
Sample C Male 5.2
Sample D Male 6.8
Midbrain
nTPM: 5.8
Samples: 4

Max nTPM: 8.7
Min nTPM: 4.3
Sample A Female 8.7
Sample B Female 5.5
Sample C Male 4.6
Sample D Male 4.3
Periaqueductal gray
nTPM: 6.2
Samples: 3

Max nTPM: 6.7
Min nTPM: 5.7
Sample B Female 5.7
Sample C Male 6.7
Sample D Male 6.3
Superior colliculi
nTPM: 6.5
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.3
Sample A Female 6.7
Sample B Female 8.4
Sample C Male 5.7
Sample D Male 5.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.5
Sample A Male 2.8
Sample B Male 2.8
Sample C Female 2.5
Sample D Female 3.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68845645 Antisense, RP_050224_02_C02, Mouse strain C57BL/6J (56 days, male) 0.9

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