MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.8 nTPM
HPA Brain:71.6 nTPM
GTEx:99.8 nTPM
FANTOM5:71.2 Scaled Tags Per Million
Pig:410.4 nTPM
Mouse:2.3 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.5
2019 Male, age 18, unknown 74.7
2411 Female, age 72, unknown 71.6
2828 Female, age 72, unknown 65.8
2586 Male, age 75, left hemisphere 65.0
1870 Female, age 42, unknown 62.4
1827 Male, age 72, unknown 62.2
1830 Male, age 51, unknown 61.8
1833 Male, age 53, unknown 59.0
2219 Male, age 76, both hemispheres 56.5
2666 Male, age 74, left hemisphere 56.1
Dorsal raphe nucleus
nTPM: 70.3
2298 Female, age 72, unknown 77.8
2047 Male, age 72, unknown 73.9
1828 Male, age 53, unknown 71.9
2750 Male, age 76, both hemispheres 69.3
2016 Female, age 72, unknown 58.5
Inferior colliculus
nTPM: 59.8
2097 Female, age 72, unknown 66.6
1848 Female, age 42, unknown 61.1
1890 Male, age 53, unknown 58.7
2849 Male, age 72, unknown 52.9
Median raphe nucleus
nTPM: 69.8
2220 Male, age 76, midline 69.8
Periaquaductal grey, anterior
nTPM: 66.1
2502 Female, age 75, unknown 72.0
1947 Male, age 18, unknown 65.4
1795 Male, age 51, unknown 60.7
Periaquaductal grey, dorsal
nTPM: 58.2
2850 Male, age 76, both hemispheres 59.8
1840 Male, age 53, unknown 59.6
2464 Female, age 72, unknown 57.8
1831 Male, age 72, unknown 55.7
Periaquaductal grey, lateral
nTPM: 59.1
2272 Male, age 74, both hemispheres 65.1
2140 Male, age 76, both hemispheres 57.6
2053 Male, age 18, unknown 54.5
Pretectal area
nTPM: 65.4
1817 Female, age 42, unknown 82.5
2007 Male, age 72, unknown 78.6
2273 Male, age 74, both hemispheres 70.8
1816 Male, age 51, unknown 68.1
1815 Male, age 53, unknown 67.9
1944 Female, age 72, unknown 67.4
2667 Female, age 75, unknown 62.2
2224 Female, age 72, unknown 60.7
2825 Male, age 18, unknown 55.1
2407 Male, age 75, both hemispheres 54.4
2316 Male, age 76, right hemisphere 51.8
Red nucleus
nTPM: 71.6
1865 Male, age 51, unknown 79.3
1821 Female, age 72, unknown 78.6
2785 Male, age 18, unknown 77.7
1954 Female, age 42, unknown 75.4
1904 Male, age 53, unknown 74.6
2503 Female, age 72, unknown 72.5
2725 Female, age 75, unknown 71.4
2227 Male, age 72, unknown 69.9
2769 Male, age 72, unknown 69.3
2588 Male, age 74, left hemisphere 68.5
2823 Male, age 76, right hemisphere 64.1
2584 Male, age 75, left hemisphere 58.3
Substantia nigra
nTPM: 69.3
1916 Female, age 42, unknown 84.2
1889 Female, age 72, unknown 76.0
1851 Male, age 51, unknown 75.4
1941 Male, age 53, unknown 70.6
2665 Male, age 74, both hemispheres 69.3
2409 Female, age 72, unknown 68.3
2241 Male, age 72, unknown 67.9
2590 Female, age 75, unknown 64.8
2699 Male, age 18, unknown 62.8
2583 Male, age 75, right hemisphere 54.0
Superior colliculus
nTPM: 61.9
2587 Male, age 74, left hemisphere 75.5
2261 Male, age 18, unknown 67.2
1796 Male, age 53, unknown 62.7
2668 Female, age 75, unknown 62.4
1913 Female, age 42, unknown 61.7
1995 Male, age 72, unknown 61.4
1839 Male, age 51, unknown 60.8
2087 Female, age 72, unknown 59.3
1895 Male, age 76, right hemisphere 58.1
2664 Male, age 75, both hemispheres 50.0
Ventral tegmental area
nTPM: 71.0
2410 Female, age 72, unknown 84.9
2218 Male, age 76, both hemispheres 72.6
2223 Female, age 72, unknown 72.6
1915 Female, age 42, unknown 69.8
2021 Male, age 53, unknown 63.8
1942 Male, age 51, unknown 62.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 99.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.8
Samples: 139

Max nTPM: 189.7
Min nTPM: 60.5
Std nTPM: 20.3
Median nTPM: 95.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 189.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 163.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 153.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 152.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 152.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 149.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 144.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 142.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 139.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 136.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 129.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.2
FF:10158-103A5 76 years, female 71.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 410.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 363.1
Samples: 4

Max nTPM: 520.1
Min nTPM: 263.5
Sample A Female 520.1
Sample B Female 331.3
Sample C Male 337.4
Sample D Male 263.5
Midbrain
nTPM: 401.4
Samples: 4

Max nTPM: 543.0
Min nTPM: 316.8
Sample A Female 543.0
Sample B Female 354.6
Sample C Male 391.2
Sample D Male 316.8
Periaqueductal gray
nTPM: 314.2
Samples: 3

Max nTPM: 346.5
Min nTPM: 283.9
Sample B Female 312.2
Sample C Male 346.5
Sample D Male 283.9
Superior colliculi
nTPM: 410.4
Samples: 4

Max nTPM: 547.3
Min nTPM: 325.2
Sample A Female 547.3
Sample B Female 352.1
Sample C Male 417.1
Sample D Male 325.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.3
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.7
Sample A Male 3.2
Sample B Male 2.2
Sample C Female 1.7
Sample D Female 2.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
69059832 Antisense, RP_050317_04_B07, Mouse strain C57BL/6J (56 days, male) 4.7

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