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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
47.1
nTPM
FANTOM5:
164.6
Scaled Tags Per Million
Pig:
72.5
nTPM
PONS - HPA Brain RNA-seq
Max nTPM
47.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 31.5
2188
Female, age 91, both hemispheres
34.7
2301
Female, age 85, both hemispheres
32.1
1984
Male, age 76, both hemispheres
31.6
2090
Male, age 80, both hemispheres
27.6
Dorsal cochlear nucleus nTPM: 26.9
2187
Female, age 91, both hemispheres
31.2
2058
Male, age 76, both hemispheres
28.7
2802
Male, age 74, right hemisphere
27.8
2378
Male, age 80, both hemispheres
25.5
2370
Male, age 61, both hemispheres
21.6
Dorsal tegmental nucleus nTPM: 28.7
1936
Male, age 76, left hemisphere
30.5
2083
Male, age 80, both hemispheres
30.2
2326
Male, age 74, both hemispheres
28.8
2358
Male, age 61, both hemispheres
25.5
Dorsolateral tegmental area nTPM: 28.3
2654
Male, age 80, both hemispheres
33.2
2360
Male, age 74, both hemispheres
28.5
2751
Female, age 85, both hemispheres
28.0
2337
Male, age 61, both hemispheres
27.2
2141
Male, age 76, both hemispheres
24.6
Kolliker-Fuse nucleus nTPM: 32.6
2793
Female, age 91, left hemisphere
34.4
2163
Male, age 80, both hemispheres
32.9
2315
Male, age 76, right hemisphere
30.6
Lateral lemniscal nuclei nTPM: 38.9
2169
Male, age 76, both hemispheres
48.0
2036
Male, age 80, both hemispheres
40.9
2746
Female, age 85, left hemisphere
38.8
2453
Male, age 74, right hemisphere
34.5
2320
Female, age 91, left hemisphere
32.4
Lateral parabrachial nucleus nTPM: 32.8
2139
Female, age 85, right hemisphere
42.1
2013
Male, age 80, both hemispheres
32.0
2792
Male, age 76, both hemispheres
30.2
2790
Male, age 61, both hemispheres
27.0
Lateral vestibular nucleus nTPM: 31.1
2184
Male, age 76, both hemispheres
33.1
2311
Male, age 80, both hemispheres
29.1
Locus coeruleus nTPM: 31.5
2014
Male, age 55, unknown
35.7
1980
Male, age 76, both hemispheres
33.6
2788
Male, age 74, unknown
32.9
2720
Male, age 74, both hemispheres
30.6
2123
Female, age 91, both hemispheres
30.5
2162
Male, age 80, both hemispheres
29.5
2317
Female, age 72, unknown
28.1
Medial parabrachial nucleus nTPM: 28.6
2854
Male, age 80, both hemispheres
34.2
2170
Female, age 91, both hemispheres
31.5
2786
Male, age 76, both hemispheres
28.1
2156
Male, age 61, both hemispheres
25.6
2463
Female, age 85, right hemisphere
23.4
Medial periolivary nuclei nTPM: 41.5
2063
Male, age 76, both hemispheres
51.4
2171
Female, age 85, both hemispheres
51.1
2791
Male, age 74, right hemisphere
35.6
2081
Male, age 80, both hemispheres
35.4
2458
Female, age 91, both hemispheres
34.2
Motor facial nucleus nTPM: 37.9
2062
Male, age 76, both hemispheres
50.7
2697
Female, age 85, both hemispheres
40.1
2365
Male, age 74, right hemisphere
38.2
2327
Male, age 80, both hemispheres
36.3
2795
Female, age 91, both hemispheres
33.2
2126
Male, age 61, both hemispheres
28.7
Motor trigeminal nucleus nTPM: 29.3
2079
Male, age 80, both hemispheres
34.8
2560
Male, age 74, both hemispheres
32.3
2321
Female, age 91, both hemispheres
30.3
2309
Male, age 76, both hemispheres
26.9
2335
Male, age 61, both hemispheres
22.1
Nuclei of the trapezoid body nTPM: 44.2
2159
Male, age 61, both hemispheres
54.1
1983
Male, age 76, both hemispheres
50.2
2735
Female, age 85, both hemispheres
49.9
2166
Male, age 80, both hemispheres
34.7
2368
Female, age 91, both hemispheres
32.0
Nucleus raphe magnus nTPM: 44.5
2160
Male, age 61, both hemispheres
56.9
2172
Female, age 85, both hemispheres
50.4
2051
Male, age 76, both hemispheres
45.7
2455
Male, age 74, both hemispheres
42.5
2328
Male, age 80, both hemispheres
38.1
2459
Female, age 91, both hemispheres
33.4
Paramedian reticular nucleus nTPM: 35.7
2050
Female, age 85, both hemispheres
44.6
2052
Male, age 76, both hemispheres
37.1
2313
Male, age 61, both hemispheres
32.5
2057
Male, age 80, both hemispheres
28.5
Pedunculopontine tegmental nucleus nTPM: 29.1
2338
Male, age 61, both hemispheres
32.2
2334
Male, age 80, both hemispheres
29.0
1921
Female, age 85, both hemispheres
26.2
Pontine nuclei nTPM: 47.1
2787
Female, age 85, both hemispheres
61.6
1863
Male, age 55, unknown
61.5
2727
Male, age 61, right hemisphere
55.6
2109
Female, age 72, unknown
47.4
1968
Male, age 76, left hemisphere
45.2
2454
Male, age 74, left hemisphere
38.5
2319
Female, age 91, both hemispheres
35.3
2115
Male, age 80, left hemisphere
31.7
Pontine raphe nucleus nTPM: 34.7
2122
Female, age 85, midline
42.4
2853
Male, age 76, midline
26.9
Posteroventral cochlear nucleus nTPM: 30.6
2752
Female, age 85, both hemispheres
35.3
2135
Female, age 91, both hemispheres
31.9
2341
Male, age 80, both hemispheres
31.7
2070
Male, age 76, both hemispheres
30.9
2371
Male, age 61, both hemispheres
23.2
Principal sensory trigeminal nucleus nTPM: 38.1
2158
Male, age 61, both hemispheres
44.4
2008
Male, age 80, left hemisphere
41.8
2367
Female, age 91, left hemisphere
34.4
2324
Male, age 76, both hemispheres
32.0
Reticular pontine nucleus, caudal nTPM: 35.4
2092
Male, age 76, both hemispheres
40.7
2559
Male, age 74, both hemispheres
36.4
2332
Male, age 80, right hemisphere
32.7
2457
Female, age 91, both hemispheres
31.6
Reticular pontine nucleus, oral nTPM: 34.7
2361
Male, age 74, both hemispheres
44.3
2012
Female, age 85, both hemispheres
38.3
2366
Female, age 91, both hemispheres
33.4
1939
Male, age 80, both hemispheres
28.9
2167
Male, age 76, both hemispheres
28.7
Reticulotegmental nucleus nTPM: 30.7
2325
Male, age 76, both hemispheres
35.9
2322
Female, age 91, both hemispheres
30.6
2333
Male, age 80, both hemispheres
28.7
2452
Male, age 74, both hemispheres
27.5
Spinal trigeminal nucleus, oral nTPM: 29.9
2737
Female, age 85, both hemispheres
31.9
2164
Male, age 80, both hemispheres
29.7
1978
Male, age 76, both hemispheres
28.0
Subcoeruleus area nTPM: 31.6
2089
Male, age 76, left hemisphere
37.7
1958
Male, age 80, both hemispheres
34.0
2451
Male, age 74, both hemispheres
29.5
2323
Female, age 91, left hemisphere
28.7
2369
Female, age 85, left hemisphere
27.9
Superior olive nTPM: 37.9
1875
Female, age 85, both hemispheres
48.6
2020
Male, age 76, both hemispheres
40.2
2364
Male, age 74, right hemisphere
35.8
2329
Male, age 80, right hemisphere
33.7
2561
Female, age 91, both hemispheres
31.3
Ventral periolivary nuclei nTPM: 40.6
2130
Female, age 85, both hemispheres
46.1
2023
Male, age 76, both hemispheres
41.2
2165
Male, age 80, both hemispheres
40.7
2794
Female, age 91, left hemisphere
34.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 36.2
1959
Male, age 76, both hemispheres
43.8
2449
Male, age 74, both hemispheres
41.7
2840
Female, age 85, both hemispheres
38.4
2161
Male, age 80, both hemispheres
36.3
2456
Female, age 91, both hemispheres
30.4
2359
Male, age 61, both hemispheres
26.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
