MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.2 nTPM
HPA Brain:18.7 nTPM
GTEx:13.2 nTPM
FANTOM5:11.0 Scaled Tags Per Million
Mouse:1.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.8
2219 Male, age 76, both hemispheres 24.5
2586 Male, age 75, left hemisphere 24.1
2828 Female, age 72, unknown 18.0
1827 Male, age 72, unknown 17.0
2666 Male, age 74, left hemisphere 15.4
1870 Female, age 42, unknown 14.0
2411 Female, age 72, unknown 14.0
2019 Male, age 18, unknown 13.9
1833 Male, age 53, unknown 13.4
1830 Male, age 51, unknown 13.2
Dorsal raphe nucleus
nTPM: 13.8
2047 Male, age 72, unknown 15.5
1828 Male, age 53, unknown 14.6
2016 Female, age 72, unknown 14.6
2298 Female, age 72, unknown 14.2
2750 Male, age 76, both hemispheres 10.0
Inferior colliculus
nTPM: 14.5
1848 Female, age 42, unknown 15.0
1890 Male, age 53, unknown 14.7
2097 Female, age 72, unknown 14.3
2849 Male, age 72, unknown 14.0
Median raphe nucleus
nTPM: 10.5
2220 Male, age 76, midline 10.5
Periaquaductal grey, anterior
nTPM: 18.7
1947 Male, age 18, unknown 22.4
1795 Male, age 51, unknown 17.3
2502 Female, age 75, unknown 16.5
Periaquaductal grey, dorsal
nTPM: 12.1
1840 Male, age 53, unknown 13.1
1831 Male, age 72, unknown 12.9
2464 Female, age 72, unknown 11.6
2850 Male, age 76, both hemispheres 10.8
Periaquaductal grey, lateral
nTPM: 12.4
2140 Male, age 76, both hemispheres 13.5
2053 Male, age 18, unknown 13.4
2272 Male, age 74, both hemispheres 10.3
Pretectal area
nTPM: 14.9
1816 Male, age 51, unknown 18.0
2667 Female, age 75, unknown 17.5
1817 Female, age 42, unknown 17.3
1944 Female, age 72, unknown 17.3
2825 Male, age 18, unknown 14.2
2273 Male, age 74, both hemispheres 14.0
2007 Male, age 72, unknown 13.8
2224 Female, age 72, unknown 13.6
1815 Male, age 53, unknown 13.1
2407 Male, age 75, both hemispheres 13.1
2316 Male, age 76, right hemisphere 12.0
Red nucleus
nTPM: 16.0
1954 Female, age 42, unknown 19.9
2503 Female, age 72, unknown 18.3
1865 Male, age 51, unknown 17.9
1821 Female, age 72, unknown 17.0
1904 Male, age 53, unknown 16.9
2227 Male, age 72, unknown 16.1
2785 Male, age 18, unknown 16.1
2588 Male, age 74, left hemisphere 15.7
2769 Male, age 72, unknown 15.4
2823 Male, age 76, right hemisphere 14.2
2725 Female, age 75, unknown 13.1
2584 Male, age 75, left hemisphere 11.2
Substantia nigra
nTPM: 15.2
1851 Male, age 51, unknown 17.6
1916 Female, age 42, unknown 17.0
1941 Male, age 53, unknown 17.0
2583 Male, age 75, right hemisphere 16.5
1889 Female, age 72, unknown 15.2
2699 Male, age 18, unknown 14.6
2590 Female, age 75, unknown 14.5
2665 Male, age 74, both hemispheres 13.8
2241 Male, age 72, unknown 13.4
2409 Female, age 72, unknown 12.0
Superior colliculus
nTPM: 16.2
2087 Female, age 72, unknown 19.8
2664 Male, age 75, both hemispheres 19.8
2668 Female, age 75, unknown 19.1
1995 Male, age 72, unknown 16.1
1796 Male, age 53, unknown 15.3
2261 Male, age 18, unknown 15.2
1913 Female, age 42, unknown 15.1
1839 Male, age 51, unknown 14.5
2587 Male, age 74, left hemisphere 13.8
1895 Male, age 76, right hemisphere 13.2
Ventral tegmental area
nTPM: 13.7
2410 Female, age 72, unknown 18.3
1915 Female, age 42, unknown 15.6
2021 Male, age 53, unknown 13.7
1942 Male, age 51, unknown 12.4
2223 Female, age 72, unknown 11.8
2218 Male, age 76, both hemispheres 10.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.2
Samples: 139

Max nTPM: 26.2
Min nTPM: 4.9
Std nTPM: 4.3
Median nTPM: 12.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 26.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 25.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 24.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 24.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 24.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 24.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 21.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 21.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 20.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 19.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 19.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.0
FF:10158-103A5 76 years, female 11.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.4
Sample A Male 1.3
Sample B Male 0.4
Sample C Female 0.9
Sample D Female 1.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69735150 Antisense, RP_050503_02_B10, Mouse strain C57BL/6J (56 days, male) 0.1

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