MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.1 nTPM
HPA Brain:25.6 nTPM
GTEx:32.1 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:40.5 nTPM
Allen mouse:5.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.1
2586 Male, age 75, left hemisphere 31.2
2019 Male, age 18, unknown 28.5
2666 Male, age 74, left hemisphere 26.8
1827 Male, age 72, unknown 25.4
2219 Male, age 76, both hemispheres 25.2
1833 Male, age 53, unknown 24.4
2828 Female, age 72, unknown 24.4
1870 Female, age 42, unknown 21.9
2411 Female, age 72, unknown 21.8
1830 Male, age 51, unknown 21.1
Dorsal raphe nucleus
nTPM: 23.3
1828 Male, age 53, unknown 27.9
2298 Female, age 72, unknown 24.3
2750 Male, age 76, both hemispheres 23.3
2016 Female, age 72, unknown 21.7
2047 Male, age 72, unknown 19.1
Inferior colliculus
nTPM: 25.2
1848 Female, age 42, unknown 26.0
2097 Female, age 72, unknown 25.5
1890 Male, age 53, unknown 25.1
2849 Male, age 72, unknown 24.0
Median raphe nucleus
nTPM: 18.9
2220 Male, age 76, midline 18.9
Periaquaductal grey, anterior
nTPM: 21.6
1795 Male, age 51, unknown 24.4
2502 Female, age 75, unknown 21.5
1947 Male, age 18, unknown 18.8
Periaquaductal grey, dorsal
nTPM: 19.3
2464 Female, age 72, unknown 22.3
2850 Male, age 76, both hemispheres 20.2
1831 Male, age 72, unknown 18.4
1840 Male, age 53, unknown 16.3
Periaquaductal grey, lateral
nTPM: 17.2
2272 Male, age 74, both hemispheres 18.6
2053 Male, age 18, unknown 17.8
2140 Male, age 76, both hemispheres 15.4
Pretectal area
nTPM: 23.0
2007 Male, age 72, unknown 29.5
1817 Female, age 42, unknown 27.0
1816 Male, age 51, unknown 26.0
2407 Male, age 75, both hemispheres 23.5
1944 Female, age 72, unknown 23.4
2224 Female, age 72, unknown 21.7
2825 Male, age 18, unknown 21.5
1815 Male, age 53, unknown 21.2
2316 Male, age 76, right hemisphere 20.6
2273 Male, age 74, both hemispheres 19.2
2667 Female, age 75, unknown 18.8
Red nucleus
nTPM: 25.6
2769 Male, age 72, unknown 27.7
2785 Male, age 18, unknown 27.2
2588 Male, age 74, left hemisphere 27.1
2227 Male, age 72, unknown 26.7
1821 Female, age 72, unknown 26.6
1865 Male, age 51, unknown 26.2
2725 Female, age 75, unknown 25.9
2503 Female, age 72, unknown 25.2
1904 Male, age 53, unknown 24.3
1954 Female, age 42, unknown 23.8
2584 Male, age 75, left hemisphere 23.1
2823 Male, age 76, right hemisphere 23.0
Substantia nigra
nTPM: 23.9
2665 Male, age 74, both hemispheres 28.4
2583 Male, age 75, right hemisphere 26.5
1916 Female, age 42, unknown 26.4
1941 Male, age 53, unknown 25.4
1889 Female, age 72, unknown 24.9
1851 Male, age 51, unknown 24.8
2699 Male, age 18, unknown 24.6
2590 Female, age 75, unknown 23.6
2241 Male, age 72, unknown 21.9
2409 Female, age 72, unknown 12.9
Superior colliculus
nTPM: 22.8
2668 Female, age 75, unknown 26.9
2664 Male, age 75, both hemispheres 25.2
1895 Male, age 76, right hemisphere 24.0
1796 Male, age 53, unknown 23.1
2087 Female, age 72, unknown 22.9
1839 Male, age 51, unknown 22.5
2587 Male, age 74, left hemisphere 22.0
1995 Male, age 72, unknown 21.3
2261 Male, age 18, unknown 20.7
1913 Female, age 42, unknown 19.4
Ventral tegmental area
nTPM: 21.8
1915 Female, age 42, unknown 23.8
2223 Female, age 72, unknown 22.7
2410 Female, age 72, unknown 22.3
2021 Male, age 53, unknown 22.2
2218 Male, age 76, both hemispheres 21.7
1942 Male, age 51, unknown 18.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.1
Samples: 139

Max nTPM: 54.0
Min nTPM: 20.5
Std nTPM: 6.7
Median nTPM: 31.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 54.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 53.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 52.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 51.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 48.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 46.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 45.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 44.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 44.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 42.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 41.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.0
FF:10158-103A5 76 years, female 29.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.4
Samples: 4

Max nTPM: 21.6
Min nTPM: 15.0
Sample A Female 21.2
Sample B Female 15.8
Sample C Male 21.6
Sample D Male 15.0
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 19.4
Min nTPM: 14.1
Sample A Female 14.1
Sample B Female 19.1
Sample C Male 18.2
Sample D Male 19.4
Periaqueductal gray
nTPM: 16.5
Samples: 3

Max nTPM: 18.0
Min nTPM: 15.4
Sample B Female 16.2
Sample C Male 18.0
Sample D Male 15.4
Superior colliculi
nTPM: 19.8
Samples: 4

Max nTPM: 22.6
Min nTPM: 16.5
Sample A Female 22.6
Sample B Female 16.5
Sample C Male 21.8
Sample D Male 18.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.5
Samples: 4

Max nTPM: 45.0
Min nTPM: 38.3
Sample A Male 40.3
Sample B Male 38.3
Sample C Female 38.4
Sample D Female 45.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.1
68269065 Antisense, RP_041208_01_H04, Mouse strain C57BL/6J (56 days, male) 5.1

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