MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.9 nTPM
HPA Brain:34.9 nTPM
GTEx:7.9 nTPM
FANTOM5:3.2 Scaled Tags Per Million
Pig:24.2 nTPM
Mouse:25.9 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.1
2586 Male, age 75, left hemisphere 37.2
2828 Female, age 72, unknown 30.0
2019 Male, age 18, unknown 29.8
1827 Male, age 72, unknown 28.5
2666 Male, age 74, left hemisphere 25.9
2219 Male, age 76, both hemispheres 23.9
1833 Male, age 53, unknown 22.8
2411 Female, age 72, unknown 21.2
1830 Male, age 51, unknown 20.7
1870 Female, age 42, unknown 20.7
Dorsal raphe nucleus
nTPM: 28.7
2298 Female, age 72, unknown 39.1
2047 Male, age 72, unknown 31.7
1828 Male, age 53, unknown 29.0
2016 Female, age 72, unknown 25.1
2750 Male, age 76, both hemispheres 18.4
Inferior colliculus
nTPM: 25.7
2097 Female, age 72, unknown 29.1
2849 Male, age 72, unknown 25.9
1890 Male, age 53, unknown 24.0
1848 Female, age 42, unknown 23.6
Median raphe nucleus
nTPM: 24.4
2220 Male, age 76, midline 24.4
Periaquaductal grey, anterior
nTPM: 30.6
1795 Male, age 51, unknown 35.9
2502 Female, age 75, unknown 34.5
1947 Male, age 18, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 31.5
1840 Male, age 53, unknown 36.6
2850 Male, age 76, both hemispheres 34.0
2464 Female, age 72, unknown 28.1
1831 Male, age 72, unknown 27.2
Periaquaductal grey, lateral
nTPM: 31.5
2140 Male, age 76, both hemispheres 38.4
2272 Male, age 74, both hemispheres 28.4
2053 Male, age 18, unknown 27.8
Pretectal area
nTPM: 34.9
1944 Female, age 72, unknown 53.0
1816 Male, age 51, unknown 48.2
1817 Female, age 42, unknown 41.3
2007 Male, age 72, unknown 37.1
1815 Male, age 53, unknown 33.3
2224 Female, age 72, unknown 33.3
2407 Male, age 75, both hemispheres 31.2
2273 Male, age 74, both hemispheres 29.2
2825 Male, age 18, unknown 28.9
2667 Female, age 75, unknown 26.3
2316 Male, age 76, right hemisphere 22.3
Red nucleus
nTPM: 17.8
2785 Male, age 18, unknown 28.9
2725 Female, age 75, unknown 26.7
2584 Male, age 75, left hemisphere 21.0
2588 Male, age 74, left hemisphere 20.1
1954 Female, age 42, unknown 15.9
2769 Male, age 72, unknown 15.8
2227 Male, age 72, unknown 15.5
2503 Female, age 72, unknown 15.5
1904 Male, age 53, unknown 14.2
2823 Male, age 76, right hemisphere 13.9
1821 Female, age 72, unknown 13.5
1865 Male, age 51, unknown 12.7
Substantia nigra
nTPM: 24.5
1889 Female, age 72, unknown 29.7
1916 Female, age 42, unknown 28.0
1851 Male, age 51, unknown 25.9
1941 Male, age 53, unknown 25.9
2583 Male, age 75, right hemisphere 25.7
2590 Female, age 75, unknown 25.0
2665 Male, age 74, both hemispheres 22.8
2241 Male, age 72, unknown 22.5
2699 Male, age 18, unknown 20.6
2409 Female, age 72, unknown 19.5
Superior colliculus
nTPM: 30.6
2664 Male, age 75, both hemispheres 47.5
2087 Female, age 72, unknown 45.4
2261 Male, age 18, unknown 33.0
1995 Male, age 72, unknown 31.3
1796 Male, age 53, unknown 31.2
1839 Male, age 51, unknown 25.1
1913 Female, age 42, unknown 24.5
2587 Male, age 74, left hemisphere 23.8
1895 Male, age 76, right hemisphere 23.3
2668 Female, age 75, unknown 20.7
Ventral tegmental area
nTPM: 23.4
2218 Male, age 76, both hemispheres 26.8
1942 Male, age 51, unknown 24.8
2021 Male, age 53, unknown 24.7
1915 Female, age 42, unknown 23.5
2410 Female, age 72, unknown 23.5
2223 Female, age 72, unknown 17.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.9
Samples: 139

Max nTPM: 15.3
Min nTPM: 1.3
Std nTPM: 3.3
Median nTPM: 7.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 15.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 14.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 14.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 13.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 13.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 13.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 12.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 12.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 12.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.2
FF:10158-103A5 76 years, female 3.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.6
Samples: 4

Max nTPM: 32.5
Min nTPM: 10.7
Sample A Female 29.1
Sample B Female 14.1
Sample C Male 32.5
Sample D Male 10.7
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 37.6
Min nTPM: 17.1
Sample A Female 20.0
Sample B Female 17.1
Sample C Male 37.6
Sample D Male 22.2
Periaqueductal gray
nTPM: 17.9
Samples: 3

Max nTPM: 21.6
Min nTPM: 15.1
Sample B Female 15.1
Sample C Male 21.6
Sample D Male 17.1
Superior colliculi
nTPM: 20.2
Samples: 4

Max nTPM: 30.9
Min nTPM: 9.7
Sample A Female 21.0
Sample B Female 9.7
Sample C Male 30.9
Sample D Male 19.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 26.8
Min nTPM: 24.6
Sample A Male 26.8
Sample B Male 24.6
Sample C Female 26.4
Sample D Female 26.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
68844050 Antisense, RP_050217_02_G09, Mouse strain C57BL/6J (56 days, male) 7.2
74819328 Antisense, RP_060315_02_E04, Mouse strain C57BL/6J (56 days, male) 3.6

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