MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.1 nTPM
HPA Brain:22.1 nTPM
GTEx:22.1 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Pig:44.6 nTPM
Mouse:52.6 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.2
1870 Female, age 42, unknown 22.2
2219 Male, age 76, both hemispheres 22.2
2019 Male, age 18, unknown 21.7
1827 Male, age 72, unknown 21.4
1830 Male, age 51, unknown 20.9
2666 Male, age 74, left hemisphere 20.7
1833 Male, age 53, unknown 20.5
2828 Female, age 72, unknown 19.8
2411 Female, age 72, unknown 18.4
2586 Male, age 75, left hemisphere 14.2
Dorsal raphe nucleus
nTPM: 19.3
2047 Male, age 72, unknown 20.9
1828 Male, age 53, unknown 19.9
2298 Female, age 72, unknown 18.9
2750 Male, age 76, both hemispheres 18.7
2016 Female, age 72, unknown 18.3
Inferior colliculus
nTPM: 22.1
2849 Male, age 72, unknown 24.0
1848 Female, age 42, unknown 21.8
2097 Female, age 72, unknown 21.7
1890 Male, age 53, unknown 20.7
Median raphe nucleus
nTPM: 20.7
2220 Male, age 76, midline 20.7
Periaquaductal grey, anterior
nTPM: 20.4
1947 Male, age 18, unknown 23.0
2502 Female, age 75, unknown 19.7
1795 Male, age 51, unknown 18.4
Periaquaductal grey, dorsal
nTPM: 20.9
2850 Male, age 76, both hemispheres 23.5
1840 Male, age 53, unknown 20.5
2464 Female, age 72, unknown 19.8
1831 Male, age 72, unknown 19.5
Periaquaductal grey, lateral
nTPM: 20.2
2272 Male, age 74, both hemispheres 21.4
2140 Male, age 76, both hemispheres 20.8
2053 Male, age 18, unknown 18.4
Pretectal area
nTPM: 21.5
1944 Female, age 72, unknown 23.4
1816 Male, age 51, unknown 23.2
2667 Female, age 75, unknown 22.8
1817 Female, age 42, unknown 22.6
2007 Male, age 72, unknown 22.0
2273 Male, age 74, both hemispheres 21.6
2224 Female, age 72, unknown 21.0
2825 Male, age 18, unknown 20.9
1815 Male, age 53, unknown 20.7
2407 Male, age 75, both hemispheres 19.7
2316 Male, age 76, right hemisphere 18.4
Red nucleus
nTPM: 20.2
1821 Female, age 72, unknown 22.4
1954 Female, age 42, unknown 22.2
2725 Female, age 75, unknown 21.8
1904 Male, age 53, unknown 21.1
1865 Male, age 51, unknown 21.0
2823 Male, age 76, right hemisphere 21.0
2503 Female, age 72, unknown 19.5
2588 Male, age 74, left hemisphere 19.5
2785 Male, age 18, unknown 19.4
2584 Male, age 75, left hemisphere 18.6
2769 Male, age 72, unknown 18.6
2227 Male, age 72, unknown 17.7
Substantia nigra
nTPM: 20.3
2241 Male, age 72, unknown 22.3
1941 Male, age 53, unknown 22.1
1889 Female, age 72, unknown 21.8
1916 Female, age 42, unknown 21.3
1851 Male, age 51, unknown 20.1
2665 Male, age 74, both hemispheres 19.9
2409 Female, age 72, unknown 19.5
2699 Male, age 18, unknown 19.4
2583 Male, age 75, right hemisphere 18.4
2590 Female, age 75, unknown 18.0
Superior colliculus
nTPM: 20.1
1895 Male, age 76, right hemisphere 22.5
2587 Male, age 74, left hemisphere 22.0
2087 Female, age 72, unknown 21.2
1913 Female, age 42, unknown 20.3
2668 Female, age 75, unknown 20.2
2261 Male, age 18, unknown 19.9
1839 Male, age 51, unknown 19.5
1796 Male, age 53, unknown 18.6
1995 Male, age 72, unknown 18.5
2664 Male, age 75, both hemispheres 18.1
Ventral tegmental area
nTPM: 19.5
2223 Female, age 72, unknown 21.8
1915 Female, age 42, unknown 19.9
2218 Male, age 76, both hemispheres 19.9
2021 Male, age 53, unknown 19.4
1942 Male, age 51, unknown 18.8
2410 Female, age 72, unknown 17.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.1
Samples: 139

Max nTPM: 59.5
Min nTPM: 13.9
Std nTPM: 7.1
Median nTPM: 20.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 59.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 57.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 50.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 49.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 39.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 36.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 32.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 31.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 28.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.9
FF:10158-103A5 76 years, female 48.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.1
Samples: 4

Max nTPM: 49.5
Min nTPM: 35.9
Sample A Female 42.8
Sample B Female 40.0
Sample C Male 49.5
Sample D Male 35.9
Midbrain
nTPM: 43.2
Samples: 4

Max nTPM: 46.5
Min nTPM: 38.7
Sample A Female 38.7
Sample B Female 45.4
Sample C Male 46.5
Sample D Male 42.0
Periaqueductal gray
nTPM: 44.6
Samples: 3

Max nTPM: 49.0
Min nTPM: 42.4
Sample B Female 42.4
Sample C Male 49.0
Sample D Male 42.4
Superior colliculi
nTPM: 44.5
Samples: 4

Max nTPM: 49.2
Min nTPM: 42.0
Sample A Female 42.0
Sample B Female 44.5
Sample C Male 49.2
Sample D Male 42.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 52.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.6
Samples: 4

Max nTPM: 54.4
Min nTPM: 51.2
Sample A Male 54.4
Sample B Male 51.9
Sample C Female 51.2
Sample D Female 52.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
2444 Antisense, RP_040604_01_E05, Mouse strain C57BL/6J (56 days, male) 7.0
2445 Antisense, RP_040604_01_E05, Mouse strain C57BL/6J (56 days, male) 4.5

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