MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.9 nTPM
HPA Brain:51.7 nTPM
GTEx:46.9 nTPM
FANTOM5:105.4 Scaled Tags Per Million
Pig:138.3 nTPM
Mouse:51.5 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.4
1833 Male, age 53, unknown 52.3
1870 Female, age 42, unknown 52.1
1830 Male, age 51, unknown 50.3
2019 Male, age 18, unknown 50.1
1827 Male, age 72, unknown 49.4
2219 Male, age 76, both hemispheres 47.2
2828 Female, age 72, unknown 46.8
2411 Female, age 72, unknown 46.2
2666 Male, age 74, left hemisphere 46.2
2586 Male, age 75, left hemisphere 43.7
Dorsal raphe nucleus
nTPM: 46.4
2750 Male, age 76, both hemispheres 53.4
1828 Male, age 53, unknown 46.3
2016 Female, age 72, unknown 45.0
2298 Female, age 72, unknown 43.8
2047 Male, age 72, unknown 43.3
Inferior colliculus
nTPM: 47.0
2849 Male, age 72, unknown 51.9
2097 Female, age 72, unknown 46.3
1848 Female, age 42, unknown 45.3
1890 Male, age 53, unknown 44.6
Median raphe nucleus
nTPM: 50.0
2220 Male, age 76, midline 50.0
Periaquaductal grey, anterior
nTPM: 44.8
1947 Male, age 18, unknown 47.5
2502 Female, age 75, unknown 44.1
1795 Male, age 51, unknown 42.9
Periaquaductal grey, dorsal
nTPM: 44.0
2850 Male, age 76, both hemispheres 51.0
1831 Male, age 72, unknown 43.5
2464 Female, age 72, unknown 41.0
1840 Male, age 53, unknown 40.6
Periaquaductal grey, lateral
nTPM: 44.1
2272 Male, age 74, both hemispheres 46.0
2140 Male, age 76, both hemispheres 43.8
2053 Male, age 18, unknown 42.4
Pretectal area
nTPM: 49.8
1815 Male, age 53, unknown 54.7
1817 Female, age 42, unknown 54.5
1816 Male, age 51, unknown 52.7
2007 Male, age 72, unknown 51.9
2667 Female, age 75, unknown 50.5
1944 Female, age 72, unknown 49.8
2407 Male, age 75, both hemispheres 49.6
2825 Male, age 18, unknown 47.8
2316 Male, age 76, right hemisphere 47.2
2273 Male, age 74, both hemispheres 45.1
2224 Female, age 72, unknown 43.6
Red nucleus
nTPM: 51.7
2725 Female, age 75, unknown 56.7
2503 Female, age 72, unknown 55.1
2588 Male, age 74, left hemisphere 54.8
1865 Male, age 51, unknown 54.7
1821 Female, age 72, unknown 53.5
2823 Male, age 76, right hemisphere 51.7
2584 Male, age 75, left hemisphere 51.1
1904 Male, age 53, unknown 50.2
2785 Male, age 18, unknown 48.8
1954 Female, age 42, unknown 48.6
2227 Male, age 72, unknown 48.3
2769 Male, age 72, unknown 47.2
Substantia nigra
nTPM: 50.3
1916 Female, age 42, unknown 53.9
2241 Male, age 72, unknown 53.0
2665 Male, age 74, both hemispheres 53.0
2699 Male, age 18, unknown 52.6
1889 Female, age 72, unknown 50.8
1851 Male, age 51, unknown 50.2
2590 Female, age 75, unknown 49.4
1941 Male, age 53, unknown 48.6
2409 Female, age 72, unknown 46.3
2583 Male, age 75, right hemisphere 45.5
Superior colliculus
nTPM: 47.2
1913 Female, age 42, unknown 55.1
2587 Male, age 74, left hemisphere 50.0
1895 Male, age 76, right hemisphere 49.2
1796 Male, age 53, unknown 48.5
1995 Male, age 72, unknown 47.5
2261 Male, age 18, unknown 46.7
1839 Male, age 51, unknown 46.1
2087 Female, age 72, unknown 45.2
2668 Female, age 75, unknown 43.5
2664 Male, age 75, both hemispheres 39.8
Ventral tegmental area
nTPM: 48.7
2218 Male, age 76, both hemispheres 52.4
2223 Female, age 72, unknown 52.2
2410 Female, age 72, unknown 49.8
2021 Male, age 53, unknown 47.5
1915 Female, age 42, unknown 45.7
1942 Male, age 51, unknown 44.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.9
Samples: 139

Max nTPM: 72.4
Min nTPM: 33.0
Std nTPM: 7.8
Median nTPM: 45.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 72.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 70.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 68.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 67.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 66.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 63.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 61.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 60.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 59.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 59.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 58.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.4
FF:10158-103A5 76 years, female 105.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 138.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 129.9
Samples: 4

Max nTPM: 146.6
Min nTPM: 106.7
Sample A Female 136.1
Sample B Female 106.7
Sample C Male 130.1
Sample D Male 146.6
Midbrain
nTPM: 138.3
Samples: 4

Max nTPM: 190.2
Min nTPM: 118.8
Sample A Female 190.2
Sample B Female 118.8
Sample C Male 121.9
Sample D Male 122.3
Periaqueductal gray
nTPM: 113.0
Samples: 3

Max nTPM: 120.0
Min nTPM: 108.3
Sample B Female 108.3
Sample C Male 120.0
Sample D Male 110.8
Superior colliculi
nTPM: 133.6
Samples: 4

Max nTPM: 146.6
Min nTPM: 105.8
Sample A Female 145.5
Sample B Female 105.8
Sample C Male 136.5
Sample D Male 146.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.5
Samples: 4

Max nTPM: 53.4
Min nTPM: 49.4
Sample A Male 50.7
Sample B Male 49.4
Sample C Female 53.4
Sample D Female 52.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
69262297 Antisense, RP_050303_01_G02, Mouse strain C57BL/6J (56 days, male) 4.3

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