MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:122.2 nTPM
HPA Brain:171.2 nTPM
GTEx:122.2 nTPM
FANTOM5:269.2 Scaled Tags Per Million
Pig:88.8 nTPM
Mouse:128.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 171.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 134.5
1830 Male, age 51, unknown 159.0
2666 Male, age 74, left hemisphere 157.1
2586 Male, age 75, left hemisphere 150.7
1870 Female, age 42, unknown 149.5
1833 Male, age 53, unknown 145.2
2411 Female, age 72, unknown 136.9
2019 Male, age 18, unknown 136.7
2828 Female, age 72, unknown 111.7
1827 Male, age 72, unknown 108.4
2219 Male, age 76, both hemispheres 90.4
Dorsal raphe nucleus
nTPM: 109.0
2750 Male, age 76, both hemispheres 135.9
2016 Female, age 72, unknown 122.1
1828 Male, age 53, unknown 109.2
2047 Male, age 72, unknown 98.9
2298 Female, age 72, unknown 78.6
Inferior colliculus
nTPM: 106.9
1890 Male, age 53, unknown 113.7
1848 Female, age 42, unknown 111.3
2849 Male, age 72, unknown 104.7
2097 Female, age 72, unknown 97.8
Median raphe nucleus
nTPM: 103.5
2220 Male, age 76, midline 103.5
Periaquaductal grey, anterior
nTPM: 107.8
2502 Female, age 75, unknown 125.1
1947 Male, age 18, unknown 111.4
1795 Male, age 51, unknown 87.0
Periaquaductal grey, dorsal
nTPM: 97.7
2464 Female, age 72, unknown 112.3
1831 Male, age 72, unknown 101.1
2850 Male, age 76, both hemispheres 98.1
1840 Male, age 53, unknown 79.3
Periaquaductal grey, lateral
nTPM: 88.0
2053 Male, age 18, unknown 95.9
2140 Male, age 76, both hemispheres 88.8
2272 Male, age 74, both hemispheres 79.2
Pretectal area
nTPM: 95.0
2316 Male, age 76, right hemisphere 113.6
1815 Male, age 53, unknown 113.3
2407 Male, age 75, both hemispheres 108.7
1817 Female, age 42, unknown 106.4
2007 Male, age 72, unknown 105.9
2825 Male, age 18, unknown 103.9
2224 Female, age 72, unknown 86.3
1944 Female, age 72, unknown 82.5
1816 Male, age 51, unknown 76.9
2273 Male, age 74, both hemispheres 75.7
2667 Female, age 75, unknown 71.4
Red nucleus
nTPM: 171.2
2503 Female, age 72, unknown 204.7
1865 Male, age 51, unknown 198.5
1904 Male, age 53, unknown 186.9
1821 Female, age 72, unknown 178.5
2588 Male, age 74, left hemisphere 177.5
2227 Male, age 72, unknown 176.1
1954 Female, age 42, unknown 175.1
2769 Male, age 72, unknown 173.2
2725 Female, age 75, unknown 155.0
2823 Male, age 76, right hemisphere 153.3
2785 Male, age 18, unknown 145.8
2584 Male, age 75, left hemisphere 129.4
Substantia nigra
nTPM: 112.0
2699 Male, age 18, unknown 124.5
2665 Male, age 74, both hemispheres 121.4
2583 Male, age 75, right hemisphere 118.9
1851 Male, age 51, unknown 117.3
2590 Female, age 75, unknown 113.8
2409 Female, age 72, unknown 112.5
1889 Female, age 72, unknown 108.2
1941 Male, age 53, unknown 106.4
2241 Male, age 72, unknown 103.7
1916 Female, age 42, unknown 92.7
Superior colliculus
nTPM: 115.2
2668 Female, age 75, unknown 136.5
2587 Male, age 74, left hemisphere 135.2
1995 Male, age 72, unknown 132.4
1913 Female, age 42, unknown 127.0
1839 Male, age 51, unknown 121.9
2664 Male, age 75, both hemispheres 120.0
1895 Male, age 76, right hemisphere 106.8
1796 Male, age 53, unknown 93.5
2261 Male, age 18, unknown 90.9
2087 Female, age 72, unknown 87.8
Ventral tegmental area
nTPM: 115.8
2223 Female, age 72, unknown 159.7
2410 Female, age 72, unknown 113.5
2021 Male, age 53, unknown 112.4
1942 Male, age 51, unknown 107.9
1915 Female, age 42, unknown 102.0
2218 Male, age 76, both hemispheres 99.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 122.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 122.2
Samples: 139

Max nTPM: 355.2
Min nTPM: 36.7
Std nTPM: 61.5
Median nTPM: 113.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 355.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 330.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 285.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 285.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 265.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 251.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 244.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 235.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 232.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 230.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 226.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 269.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 269.2
FF:10158-103A5 76 years, female 269.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 88.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.7
Samples: 4

Max nTPM: 92.2
Min nTPM: 64.1
Sample A Female 84.2
Sample B Female 64.1
Sample C Male 66.2
Sample D Male 92.2
Midbrain
nTPM: 88.8
Samples: 4

Max nTPM: 139.4
Min nTPM: 60.0
Sample A Female 139.4
Sample B Female 77.8
Sample C Male 60.0
Sample D Male 77.9
Periaqueductal gray
nTPM: 60.1
Samples: 3

Max nTPM: 62.8
Min nTPM: 55.5
Sample B Female 62.8
Sample C Male 55.5
Sample D Male 62.1
Superior colliculi
nTPM: 71.3
Samples: 4

Max nTPM: 82.9
Min nTPM: 56.8
Sample A Female 82.9
Sample B Female 56.8
Sample C Male 67.3
Sample D Male 78.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.3
Samples: 4

Max nTPM: 133.0
Min nTPM: 120.9
Sample A Male 120.9
Sample B Male 133.0
Sample C Female 131.1
Sample D Female 128.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
2353 Antisense, RP_Baylor_102875, Mouse strain C57BL/6J (56 days, male) 0.7
2354 Antisense, RP_Baylor_102875, Mouse strain C57BL/6J (56 days, male) 0.7

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