MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.0 nTPM
HPA Brain:78.2 nTPM
GTEx:23.0 nTPM
FANTOM5:51.8 Scaled Tags Per Million
Pig:63.8 nTPM
Mouse:47.5 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.6
2411 Female, age 72, unknown 73.9
1827 Male, age 72, unknown 69.2
1870 Female, age 42, unknown 67.7
1833 Male, age 53, unknown 65.9
2219 Male, age 76, both hemispheres 65.3
1830 Male, age 51, unknown 64.2
2666 Male, age 74, left hemisphere 60.9
2019 Male, age 18, unknown 59.3
2828 Female, age 72, unknown 58.2
2586 Male, age 75, left hemisphere 51.4
Dorsal raphe nucleus
nTPM: 58.9
2750 Male, age 76, both hemispheres 72.2
1828 Male, age 53, unknown 58.7
2047 Male, age 72, unknown 57.1
2298 Female, age 72, unknown 56.9
2016 Female, age 72, unknown 49.9
Inferior colliculus
nTPM: 56.8
2097 Female, age 72, unknown 58.2
1848 Female, age 42, unknown 56.7
1890 Male, age 53, unknown 56.2
2849 Male, age 72, unknown 56.2
Median raphe nucleus
nTPM: 66.3
2220 Male, age 76, midline 66.3
Periaquaductal grey, anterior
nTPM: 63.3
1947 Male, age 18, unknown 73.7
2502 Female, age 75, unknown 60.1
1795 Male, age 51, unknown 56.1
Periaquaductal grey, dorsal
nTPM: 52.2
2464 Female, age 72, unknown 52.9
1831 Male, age 72, unknown 52.5
1840 Male, age 53, unknown 51.7
2850 Male, age 76, both hemispheres 51.5
Periaquaductal grey, lateral
nTPM: 52.6
2053 Male, age 18, unknown 55.8
2272 Male, age 74, both hemispheres 51.2
2140 Male, age 76, both hemispheres 50.8
Pretectal area
nTPM: 59.5
1815 Male, age 53, unknown 69.5
1816 Male, age 51, unknown 66.8
2007 Male, age 72, unknown 66.2
1817 Female, age 42, unknown 64.1
1944 Female, age 72, unknown 61.6
2316 Male, age 76, right hemisphere 57.2
2825 Male, age 18, unknown 56.6
2224 Female, age 72, unknown 54.2
2273 Male, age 74, both hemispheres 53.3
2667 Female, age 75, unknown 52.9
2407 Male, age 75, both hemispheres 52.5
Red nucleus
nTPM: 67.3
2725 Female, age 75, unknown 83.0
1821 Female, age 72, unknown 79.6
1865 Male, age 51, unknown 70.9
1904 Male, age 53, unknown 70.7
2503 Female, age 72, unknown 69.4
2823 Male, age 76, right hemisphere 68.9
2588 Male, age 74, left hemisphere 68.2
1954 Female, age 42, unknown 62.8
2785 Male, age 18, unknown 60.7
2227 Male, age 72, unknown 60.1
2769 Male, age 72, unknown 58.5
2584 Male, age 75, left hemisphere 54.7
Substantia nigra
nTPM: 78.2
1916 Female, age 42, unknown 105.5
2241 Male, age 72, unknown 90.4
2409 Female, age 72, unknown 87.3
1851 Male, age 51, unknown 87.2
1941 Male, age 53, unknown 72.7
2699 Male, age 18, unknown 72.6
1889 Female, age 72, unknown 69.1
2665 Male, age 74, both hemispheres 68.3
2583 Male, age 75, right hemisphere 65.5
2590 Female, age 75, unknown 63.1
Superior colliculus
nTPM: 59.8
2668 Female, age 75, unknown 68.5
1895 Male, age 76, right hemisphere 65.5
1796 Male, age 53, unknown 64.2
2261 Male, age 18, unknown 62.4
1913 Female, age 42, unknown 62.2
2587 Male, age 74, left hemisphere 60.5
2087 Female, age 72, unknown 59.1
1839 Male, age 51, unknown 57.2
1995 Male, age 72, unknown 54.2
2664 Male, age 75, both hemispheres 44.3
Ventral tegmental area
nTPM: 70.8
2410 Female, age 72, unknown 89.3
2218 Male, age 76, both hemispheres 79.7
1915 Female, age 42, unknown 75.6
2223 Female, age 72, unknown 66.6
1942 Male, age 51, unknown 59.3
2021 Male, age 53, unknown 54.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.0
Samples: 139

Max nTPM: 46.2
Min nTPM: 10.7
Std nTPM: 7.0
Median nTPM: 21.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 44.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 43.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 42.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 41.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 39.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 39.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 35.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 34.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 34.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 34.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.8
FF:10158-103A5 76 years, female 51.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.2
Samples: 4

Max nTPM: 76.7
Min nTPM: 45.7
Sample A Female 72.3
Sample B Female 45.7
Sample C Male 76.7
Sample D Male 50.1
Midbrain
nTPM: 63.8
Samples: 4

Max nTPM: 80.8
Min nTPM: 49.8
Sample A Female 49.8
Sample B Female 61.5
Sample C Male 80.8
Sample D Male 63.2
Periaqueductal gray
nTPM: 51.5
Samples: 3

Max nTPM: 55.7
Min nTPM: 44.4
Sample B Female 54.5
Sample C Male 55.7
Sample D Male 44.4
Superior colliculi
nTPM: 58.9
Samples: 4

Max nTPM: 68.6
Min nTPM: 38.1
Sample A Female 64.3
Sample B Female 38.1
Sample C Male 68.6
Sample D Male 64.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.5
Samples: 4

Max nTPM: 50.0
Min nTPM: 42.1
Sample A Male 42.1
Sample B Male 50.0
Sample C Female 50.0
Sample D Female 47.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
70302938 Antisense, RP_050609_01_B10, Mouse strain C57BL/6J (56 days, male) 1.1

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