MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA Brain:50.5 nTPM
GTEx:17.0 nTPM
FANTOM5:61.1 Scaled Tags Per Million
Mouse:46.7 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.9
2019 Male, age 18, unknown 64.3
2586 Male, age 75, left hemisphere 58.9
2411 Female, age 72, unknown 45.2
1827 Male, age 72, unknown 44.7
1870 Female, age 42, unknown 39.4
2828 Female, age 72, unknown 38.9
1833 Male, age 53, unknown 38.4
1830 Male, age 51, unknown 38.0
2666 Male, age 74, left hemisphere 37.3
2219 Male, age 76, both hemispheres 33.7
Dorsal raphe nucleus
nTPM: 41.4
2750 Male, age 76, both hemispheres 45.1
2298 Female, age 72, unknown 41.2
2016 Female, age 72, unknown 40.6
1828 Male, age 53, unknown 40.5
2047 Male, age 72, unknown 39.7
Inferior colliculus
nTPM: 44.5
2097 Female, age 72, unknown 55.5
1890 Male, age 53, unknown 46.3
1848 Female, age 42, unknown 39.0
2849 Male, age 72, unknown 37.1
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Periaquaductal grey, anterior
nTPM: 46.5
2502 Female, age 75, unknown 51.9
1795 Male, age 51, unknown 43.8
1947 Male, age 18, unknown 43.7
Periaquaductal grey, dorsal
nTPM: 39.1
1840 Male, age 53, unknown 41.5
2464 Female, age 72, unknown 40.1
1831 Male, age 72, unknown 39.4
2850 Male, age 76, both hemispheres 35.5
Periaquaductal grey, lateral
nTPM: 38.7
2140 Male, age 76, both hemispheres 45.0
2272 Male, age 74, both hemispheres 36.3
2053 Male, age 18, unknown 34.7
Pretectal area
nTPM: 50.5
2007 Male, age 72, unknown 70.6
1816 Male, age 51, unknown 64.4
1817 Female, age 42, unknown 61.8
1944 Female, age 72, unknown 60.0
1815 Male, age 53, unknown 58.1
2316 Male, age 76, right hemisphere 46.4
2667 Female, age 75, unknown 43.4
2224 Female, age 72, unknown 40.3
2273 Male, age 74, both hemispheres 40.3
2407 Male, age 75, both hemispheres 36.8
2825 Male, age 18, unknown 33.3
Red nucleus
nTPM: 46.0
2785 Male, age 18, unknown 62.5
2588 Male, age 74, left hemisphere 47.8
2503 Female, age 72, unknown 47.6
1821 Female, age 72, unknown 46.8
1904 Male, age 53, unknown 45.8
1954 Female, age 42, unknown 44.8
1865 Male, age 51, unknown 44.6
2584 Male, age 75, left hemisphere 44.5
2725 Female, age 75, unknown 44.4
2769 Male, age 72, unknown 42.2
2227 Male, age 72, unknown 41.9
2823 Male, age 76, right hemisphere 39.6
Substantia nigra
nTPM: 44.0
1889 Female, age 72, unknown 53.0
2583 Male, age 75, right hemisphere 48.5
2590 Female, age 75, unknown 45.8
1916 Female, age 42, unknown 45.7
2665 Male, age 74, both hemispheres 44.9
1851 Male, age 51, unknown 44.2
2241 Male, age 72, unknown 43.3
2409 Female, age 72, unknown 41.7
1941 Male, age 53, unknown 39.9
2699 Male, age 18, unknown 32.9
Superior colliculus
nTPM: 43.9
2261 Male, age 18, unknown 49.2
2087 Female, age 72, unknown 47.4
1796 Male, age 53, unknown 46.1
1913 Female, age 42, unknown 44.1
2668 Female, age 75, unknown 43.4
1895 Male, age 76, right hemisphere 43.1
1995 Male, age 72, unknown 42.9
2664 Male, age 75, both hemispheres 42.3
2587 Male, age 74, left hemisphere 42.0
1839 Male, age 51, unknown 38.7
Ventral tegmental area
nTPM: 40.9
2410 Female, age 72, unknown 45.5
1942 Male, age 51, unknown 42.5
2218 Male, age 76, both hemispheres 42.3
1915 Female, age 42, unknown 41.5
2223 Female, age 72, unknown 37.2
2021 Male, age 53, unknown 36.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.0
Samples: 139

Max nTPM: 31.5
Min nTPM: 9.8
Std nTPM: 3.1
Median nTPM: 16.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 25.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 24.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 24.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 22.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 22.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 22.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 22.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 22.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 22.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 21.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.1
FF:10158-103A5 76 years, female 61.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.7
Samples: 4

Max nTPM: 50.2
Min nTPM: 42.3
Sample A Male 42.3
Sample B Male 50.2
Sample C Female 47.1
Sample D Female 47.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
70429064 Antisense, RP_050609_04_H07, Mouse strain C57BL/6J (56 days, male) 4.1

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