MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:377.5 nTPM
HPA Brain:23.7 nTPM
GTEx:377.5 nTPM
FANTOM5:178.2 Scaled Tags Per Million
Mouse:256.6 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.1
1830 Male, age 51, unknown 33.1
2411 Female, age 72, unknown 27.6
1827 Male, age 72, unknown 26.2
2586 Male, age 75, left hemisphere 23.7
2666 Male, age 74, left hemisphere 21.4
2019 Male, age 18, unknown 20.7
2219 Male, age 76, both hemispheres 20.7
2828 Female, age 72, unknown 19.7
1870 Female, age 42, unknown 19.4
1833 Male, age 53, unknown 17.9
Dorsal raphe nucleus
nTPM: 18.4
2750 Male, age 76, both hemispheres 28.3
1828 Male, age 53, unknown 21.1
2016 Female, age 72, unknown 17.2
2047 Male, age 72, unknown 17.0
2298 Female, age 72, unknown 8.5
Inferior colliculus
nTPM: 23.6
1890 Male, age 53, unknown 27.9
2097 Female, age 72, unknown 25.0
2849 Male, age 72, unknown 24.6
1848 Female, age 42, unknown 17.1
Median raphe nucleus
nTPM: 16.5
2220 Male, age 76, midline 16.5
Periaquaductal grey, anterior
nTPM: 20.3
1947 Male, age 18, unknown 22.6
2502 Female, age 75, unknown 20.8
1795 Male, age 51, unknown 17.4
Periaquaductal grey, dorsal
nTPM: 22.5
2464 Female, age 72, unknown 27.9
1840 Male, age 53, unknown 23.6
1831 Male, age 72, unknown 20.8
2850 Male, age 76, both hemispheres 17.6
Periaquaductal grey, lateral
nTPM: 20.7
2140 Male, age 76, both hemispheres 21.6
2272 Male, age 74, both hemispheres 20.5
2053 Male, age 18, unknown 20.2
Pretectal area
nTPM: 20.3
2316 Male, age 76, right hemisphere 32.7
2407 Male, age 75, both hemispheres 31.0
2667 Female, age 75, unknown 27.4
2273 Male, age 74, both hemispheres 19.9
2825 Male, age 18, unknown 19.1
1816 Male, age 51, unknown 17.9
2224 Female, age 72, unknown 17.8
1817 Female, age 42, unknown 16.9
1815 Male, age 53, unknown 16.5
2007 Male, age 72, unknown 13.6
1944 Female, age 72, unknown 10.3
Red nucleus
nTPM: 20.9
2823 Male, age 76, right hemisphere 32.6
2584 Male, age 75, left hemisphere 28.5
2588 Male, age 74, left hemisphere 27.4
2769 Male, age 72, unknown 23.7
2785 Male, age 18, unknown 21.0
2227 Male, age 72, unknown 20.3
1865 Male, age 51, unknown 19.9
1821 Female, age 72, unknown 19.1
1954 Female, age 42, unknown 17.3
1904 Male, age 53, unknown 16.8
2725 Female, age 75, unknown 14.6
2503 Female, age 72, unknown 9.9
Substantia nigra
nTPM: 23.7
2241 Male, age 72, unknown 34.1
2699 Male, age 18, unknown 30.3
1851 Male, age 51, unknown 25.4
2665 Male, age 74, both hemispheres 24.7
1916 Female, age 42, unknown 22.9
2583 Male, age 75, right hemisphere 22.0
1941 Male, age 53, unknown 20.6
1889 Female, age 72, unknown 20.4
2590 Female, age 75, unknown 20.3
2409 Female, age 72, unknown 16.8
Superior colliculus
nTPM: 21.3
1913 Female, age 42, unknown 28.1
2087 Female, age 72, unknown 27.6
2664 Male, age 75, both hemispheres 25.5
1895 Male, age 76, right hemisphere 22.5
2587 Male, age 74, left hemisphere 22.4
2668 Female, age 75, unknown 22.3
1796 Male, age 53, unknown 19.2
1839 Male, age 51, unknown 15.7
2261 Male, age 18, unknown 15.4
1995 Male, age 72, unknown 14.7
Ventral tegmental area
nTPM: 17.1
2021 Male, age 53, unknown 23.2
2218 Male, age 76, both hemispheres 17.6
1942 Male, age 51, unknown 17.5
1915 Female, age 42, unknown 16.6
2223 Female, age 72, unknown 15.2
2410 Female, age 72, unknown 12.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 377.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 377.5
Samples: 139

Max nTPM: 907.0
Min nTPM: 148.3
Std nTPM: 119.3
Median nTPM: 357.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 907.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 823.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 661.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 656.2
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 616.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 604.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 575.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 560.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 552.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 551.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 547.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 178.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 178.2
FF:10158-103A5 76 years, female 178.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 256.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 256.6
Samples: 4

Max nTPM: 287.2
Min nTPM: 227.8
Sample A Male 287.2
Sample B Male 257.1
Sample C Female 227.8
Sample D Female 254.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
73716566 Antisense, RP_051206_03_C11, Mouse strain C57BL/6J (56 days, male) 1.3

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