MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.3 nTPM
HPA Brain:13.1 nTPM
GTEx:4.3 nTPM
FANTOM5:15.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.5
1833 Male, age 53, unknown 13.3
2219 Male, age 76, both hemispheres 13.0
1870 Female, age 42, unknown 12.2
2586 Male, age 75, left hemisphere 12.0
2019 Male, age 18, unknown 11.2
2666 Male, age 74, left hemisphere 11.1
2411 Female, age 72, unknown 10.8
1827 Male, age 72, unknown 10.6
2828 Female, age 72, unknown 10.4
1830 Male, age 51, unknown 10.2
Dorsal raphe nucleus
nTPM: 10.9
2047 Male, age 72, unknown 11.8
2750 Male, age 76, both hemispheres 11.1
1828 Male, age 53, unknown 10.8
2016 Female, age 72, unknown 10.8
2298 Female, age 72, unknown 10.0
Inferior colliculus
nTPM: 10.7
1848 Female, age 42, unknown 11.1
1890 Male, age 53, unknown 11.1
2097 Female, age 72, unknown 10.3
2849 Male, age 72, unknown 10.3
Median raphe nucleus
nTPM: 13.1
2220 Male, age 76, midline 13.1
Periaquaductal grey, anterior
nTPM: 12.2
2502 Female, age 75, unknown 13.3
1947 Male, age 18, unknown 11.9
1795 Male, age 51, unknown 11.5
Periaquaductal grey, dorsal
nTPM: 11.1
2850 Male, age 76, both hemispheres 12.4
2464 Female, age 72, unknown 10.9
1831 Male, age 72, unknown 10.6
1840 Male, age 53, unknown 10.4
Periaquaductal grey, lateral
nTPM: 10.8
2272 Male, age 74, both hemispheres 11.9
2053 Male, age 18, unknown 10.9
2140 Male, age 76, both hemispheres 9.5
Pretectal area
nTPM: 11.2
2273 Male, age 74, both hemispheres 12.7
1817 Female, age 42, unknown 11.9
2667 Female, age 75, unknown 11.8
2007 Male, age 72, unknown 11.7
2224 Female, age 72, unknown 11.7
1815 Male, age 53, unknown 11.5
2407 Male, age 75, both hemispheres 11.0
2825 Male, age 18, unknown 10.8
1944 Female, age 72, unknown 10.4
1816 Male, age 51, unknown 10.2
2316 Male, age 76, right hemisphere 9.8
Red nucleus
nTPM: 11.3
1865 Male, age 51, unknown 13.2
2588 Male, age 74, left hemisphere 12.9
1954 Female, age 42, unknown 12.1
2503 Female, age 72, unknown 12.1
2227 Male, age 72, unknown 11.4
2725 Female, age 75, unknown 11.4
2785 Male, age 18, unknown 11.4
1821 Female, age 72, unknown 11.3
2769 Male, age 72, unknown 11.0
2823 Male, age 76, right hemisphere 10.3
2584 Male, age 75, left hemisphere 9.6
1904 Male, age 53, unknown 9.3
Substantia nigra
nTPM: 12.1
1916 Female, age 42, unknown 13.3
2699 Male, age 18, unknown 13.1
1851 Male, age 51, unknown 12.6
2241 Male, age 72, unknown 12.5
2409 Female, age 72, unknown 12.5
1941 Male, age 53, unknown 12.0
2583 Male, age 75, right hemisphere 11.4
1889 Female, age 72, unknown 11.1
2590 Female, age 75, unknown 11.1
2665 Male, age 74, both hemispheres 11.0
Superior colliculus
nTPM: 11.2
1839 Male, age 51, unknown 12.2
1913 Female, age 42, unknown 12.2
1796 Male, age 53, unknown 11.8
2587 Male, age 74, left hemisphere 11.7
1995 Male, age 72, unknown 11.3
2261 Male, age 18, unknown 10.9
2087 Female, age 72, unknown 10.8
1895 Male, age 76, right hemisphere 10.7
2668 Female, age 75, unknown 10.4
2664 Male, age 75, both hemispheres 10.3
Ventral tegmental area
nTPM: 12.0
1915 Female, age 42, unknown 12.4
2218 Male, age 76, both hemispheres 12.4
2021 Male, age 53, unknown 12.1
1942 Male, age 51, unknown 11.8
2223 Female, age 72, unknown 11.5
2410 Female, age 72, unknown 11.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.3
Samples: 139

Max nTPM: 8.4
Min nTPM: 2.6
Std nTPM: 0.9
Median nTPM: 4.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 8.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 6.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 6.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 6.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 6.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 6.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 5.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 5.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 5.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 5.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.0
FF:10158-103A5 76 years, female 15.0

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