MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.4 nTPM
HPA Brain:18.3 nTPM
GTEx:15.4 nTPM
FANTOM5:11.4 Scaled Tags Per Million
Pig:35.3 nTPM
Mouse:51.2 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.7
2586 Male, age 75, left hemisphere 21.9
2828 Female, age 72, unknown 16.6
1827 Male, age 72, unknown 16.1
1870 Female, age 42, unknown 14.9
2019 Male, age 18, unknown 14.9
2411 Female, age 72, unknown 14.2
1833 Male, age 53, unknown 13.1
1830 Male, age 51, unknown 12.9
2666 Male, age 74, left hemisphere 11.4
2219 Male, age 76, both hemispheres 10.9
Dorsal raphe nucleus
nTPM: 17.1
2016 Female, age 72, unknown 18.9
2298 Female, age 72, unknown 18.0
1828 Male, age 53, unknown 17.6
2047 Male, age 72, unknown 16.7
2750 Male, age 76, both hemispheres 14.3
Inferior colliculus
nTPM: 17.1
2097 Female, age 72, unknown 18.9
1848 Female, age 42, unknown 18.6
1890 Male, age 53, unknown 16.1
2849 Male, age 72, unknown 14.9
Median raphe nucleus
nTPM: 12.3
2220 Male, age 76, midline 12.3
Periaquaductal grey, anterior
nTPM: 18.3
2502 Female, age 75, unknown 22.0
1795 Male, age 51, unknown 16.6
1947 Male, age 18, unknown 16.2
Periaquaductal grey, dorsal
nTPM: 16.7
1840 Male, age 53, unknown 19.4
2464 Female, age 72, unknown 16.8
1831 Male, age 72, unknown 16.1
2850 Male, age 76, both hemispheres 14.5
Periaquaductal grey, lateral
nTPM: 17.2
2140 Male, age 76, both hemispheres 19.1
2053 Male, age 18, unknown 17.6
2272 Male, age 74, both hemispheres 14.9
Pretectal area
nTPM: 17.1
2667 Female, age 75, unknown 19.8
2273 Male, age 74, both hemispheres 19.7
1816 Male, age 51, unknown 19.2
1944 Female, age 72, unknown 19.0
2224 Female, age 72, unknown 17.7
2007 Male, age 72, unknown 17.1
2316 Male, age 76, right hemisphere 16.8
1817 Female, age 42, unknown 16.4
1815 Male, age 53, unknown 15.5
2825 Male, age 18, unknown 14.1
2407 Male, age 75, both hemispheres 12.8
Red nucleus
nTPM: 14.4
1954 Female, age 42, unknown 16.3
1821 Female, age 72, unknown 16.1
2227 Male, age 72, unknown 15.6
2769 Male, age 72, unknown 15.6
2503 Female, age 72, unknown 15.2
2785 Male, age 18, unknown 15.2
1904 Male, age 53, unknown 14.4
2588 Male, age 74, left hemisphere 13.8
1865 Male, age 51, unknown 13.7
2725 Female, age 75, unknown 13.2
2823 Male, age 76, right hemisphere 12.5
2584 Male, age 75, left hemisphere 11.8
Substantia nigra
nTPM: 15.4
1916 Female, age 42, unknown 20.3
1851 Male, age 51, unknown 16.6
2699 Male, age 18, unknown 16.1
1889 Female, age 72, unknown 15.9
2241 Male, age 72, unknown 15.0
2583 Male, age 75, right hemisphere 14.6
1941 Male, age 53, unknown 14.5
2590 Female, age 75, unknown 14.2
2665 Male, age 74, both hemispheres 13.6
2409 Female, age 72, unknown 12.8
Superior colliculus
nTPM: 15.4
2664 Male, age 75, both hemispheres 18.6
2261 Male, age 18, unknown 17.3
2087 Female, age 72, unknown 16.7
1796 Male, age 53, unknown 16.4
1839 Male, age 51, unknown 15.3
2587 Male, age 74, left hemisphere 15.3
1995 Male, age 72, unknown 14.3
1895 Male, age 76, right hemisphere 13.9
1913 Female, age 42, unknown 13.3
2668 Female, age 75, unknown 12.5
Ventral tegmental area
nTPM: 14.9
1915 Female, age 42, unknown 16.7
1942 Male, age 51, unknown 15.4
2021 Male, age 53, unknown 15.3
2410 Female, age 72, unknown 15.3
2218 Male, age 76, both hemispheres 13.7
2223 Female, age 72, unknown 13.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.4
Samples: 139

Max nTPM: 32.1
Min nTPM: 7.0
Std nTPM: 5.3
Median nTPM: 14.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 32.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 29.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 29.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 29.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 28.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 27.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 26.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 25.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 25.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 23.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 23.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.4
FF:10158-103A5 76 years, female 11.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.7
Samples: 4

Max nTPM: 40.9
Min nTPM: 24.1
Sample A Female 40.9
Sample B Female 24.1
Sample C Male 29.4
Sample D Male 36.2
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 39.4
Min nTPM: 33.4
Sample A Female 34.0
Sample B Female 34.4
Sample C Male 39.4
Sample D Male 33.4
Periaqueductal gray
nTPM: 30.2
Samples: 3

Max nTPM: 32.9
Min nTPM: 28.6
Sample B Female 32.9
Sample C Male 29.1
Sample D Male 28.6
Superior colliculi
nTPM: 34.3
Samples: 4

Max nTPM: 43.4
Min nTPM: 21.8
Sample A Female 43.4
Sample B Female 21.8
Sample C Male 37.4
Sample D Male 34.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.2
Samples: 4

Max nTPM: 54.7
Min nTPM: 47.1
Sample A Male 51.7
Sample B Male 47.1
Sample C Female 51.3
Sample D Female 54.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
70430738 Antisense, RP_050614_01_H12, Mouse strain C57BL/6J (56 days, male) 3.9

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