MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.4 nTPM
HPA Brain:5.8 nTPM
GTEx:1.4 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:5.2 nTPM
Mouse:7.4 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.7
2219 Male, age 76, both hemispheres 7.9
2411 Female, age 72, unknown 5.1
1827 Male, age 72, unknown 5.0
1870 Female, age 42, unknown 4.9
2828 Female, age 72, unknown 4.9
2586 Male, age 75, left hemisphere 4.4
1833 Male, age 53, unknown 4.3
2666 Male, age 74, left hemisphere 3.8
1830 Male, age 51, unknown 3.7
2019 Male, age 18, unknown 3.2
Dorsal raphe nucleus
nTPM: 5.5
2016 Female, age 72, unknown 6.0
2298 Female, age 72, unknown 6.0
1828 Male, age 53, unknown 5.3
2047 Male, age 72, unknown 5.3
2750 Male, age 76, both hemispheres 4.7
Inferior colliculus
nTPM: 5.2
2097 Female, age 72, unknown 5.7
2849 Male, age 72, unknown 5.0
1848 Female, age 42, unknown 4.9
1890 Male, age 53, unknown 4.9
Median raphe nucleus
nTPM: 4.7
2220 Male, age 76, midline 4.7
Periaquaductal grey, anterior
nTPM: 5.3
1795 Male, age 51, unknown 5.6
1947 Male, age 18, unknown 5.5
2502 Female, age 75, unknown 4.7
Periaquaductal grey, dorsal
nTPM: 5.7
1831 Male, age 72, unknown 6.0
1840 Male, age 53, unknown 5.9
2850 Male, age 76, both hemispheres 5.6
2464 Female, age 72, unknown 5.2
Periaquaductal grey, lateral
nTPM: 5.8
2053 Male, age 18, unknown 6.4
2272 Male, age 74, both hemispheres 5.9
2140 Male, age 76, both hemispheres 5.1
Pretectal area
nTPM: 4.9
2273 Male, age 74, both hemispheres 7.1
2825 Male, age 18, unknown 5.8
2224 Female, age 72, unknown 5.7
2407 Male, age 75, both hemispheres 5.2
2316 Male, age 76, right hemisphere 5.0
1816 Male, age 51, unknown 4.7
1944 Female, age 72, unknown 4.5
1815 Male, age 53, unknown 4.4
2007 Male, age 72, unknown 4.0
1817 Female, age 42, unknown 3.9
2667 Female, age 75, unknown 3.8
Red nucleus
nTPM: 4.5
2725 Female, age 75, unknown 5.8
1904 Male, age 53, unknown 5.3
1821 Female, age 72, unknown 5.1
2823 Male, age 76, right hemisphere 5.0
2588 Male, age 74, left hemisphere 4.7
1954 Female, age 42, unknown 4.5
2227 Male, age 72, unknown 4.5
2503 Female, age 72, unknown 4.5
2769 Male, age 72, unknown 4.3
1865 Male, age 51, unknown 4.2
2785 Male, age 18, unknown 3.3
2584 Male, age 75, left hemisphere 3.2
Substantia nigra
nTPM: 4.8
2241 Male, age 72, unknown 6.3
2699 Male, age 18, unknown 5.7
2590 Female, age 75, unknown 5.5
1916 Female, age 42, unknown 5.4
2409 Female, age 72, unknown 5.2
1851 Male, age 51, unknown 4.8
2665 Male, age 74, both hemispheres 4.2
1941 Male, age 53, unknown 4.0
2583 Male, age 75, right hemisphere 3.8
1889 Female, age 72, unknown 3.5
Superior colliculus
nTPM: 4.7
2261 Male, age 18, unknown 5.3
2664 Male, age 75, both hemispheres 5.3
1796 Male, age 53, unknown 5.2
1839 Male, age 51, unknown 5.2
1895 Male, age 76, right hemisphere 5.0
2587 Male, age 74, left hemisphere 4.8
2668 Female, age 75, unknown 4.4
2087 Female, age 72, unknown 4.2
1995 Male, age 72, unknown 4.0
1913 Female, age 42, unknown 3.8
Ventral tegmental area
nTPM: 5.1
1915 Female, age 42, unknown 6.0
1942 Male, age 51, unknown 5.8
2021 Male, age 53, unknown 5.7
2410 Female, age 72, unknown 4.6
2218 Male, age 76, both hemispheres 4.3
2223 Female, age 72, unknown 4.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.4
Samples: 139

Max nTPM: 2.9
Min nTPM: 0.5
Std nTPM: 0.4
Median nTPM: 1.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 2.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 2.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 2.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 2.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 2.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 2.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 2.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.1
Samples: 4

Max nTPM: 5.7
Min nTPM: 2.7
Sample A Female 2.7
Sample B Female 4.4
Sample C Male 3.5
Sample D Male 5.7
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 5.3
Min nTPM: 2.9
Sample A Female 3.8
Sample B Female 5.3
Sample C Male 2.9
Sample D Male 3.9
Periaqueductal gray
nTPM: 5.2
Samples: 3

Max nTPM: 5.6
Min nTPM: 4.8
Sample B Female 5.6
Sample C Male 4.8
Sample D Male 5.1
Superior colliculi
nTPM: 3.3
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.8
Sample A Female 3.1
Sample B Female 3.4
Sample C Male 2.8
Sample D Male 4.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 7.8
Min nTPM: 7.0
Sample A Male 7.1
Sample B Male 7.8
Sample C Female 7.8
Sample D Female 7.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70609206 Antisense, RP_050414_01_B08, Mouse strain C57BL/6J (56 days, male) 0.5

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