MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.6 nTPM
HPA Brain:117.1 nTPM
GTEx:21.6 nTPM
FANTOM5:9.2 Scaled Tags Per Million
Pig:83.0 nTPM
Mouse:112.5 nTPM
Allen mouse:9.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 117.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.7
2666 Male, age 74, left hemisphere 87.5
1870 Female, age 42, unknown 81.9
1827 Male, age 72, unknown 69.2
2411 Female, age 72, unknown 68.1
2219 Male, age 76, both hemispheres 55.4
1833 Male, age 53, unknown 53.9
1830 Male, age 51, unknown 48.1
2828 Female, age 72, unknown 37.5
2586 Male, age 75, left hemisphere 29.4
2019 Male, age 18, unknown 6.0
Dorsal raphe nucleus
nTPM: 109.9
2047 Male, age 72, unknown 147.1
1828 Male, age 53, unknown 125.7
2298 Female, age 72, unknown 120.6
2750 Male, age 76, both hemispheres 105.3
2016 Female, age 72, unknown 50.8
Inferior colliculus
nTPM: 61.7
1848 Female, age 42, unknown 81.6
2849 Male, age 72, unknown 70.9
2097 Female, age 72, unknown 54.1
1890 Male, age 53, unknown 40.4
Median raphe nucleus
nTPM: 117.1
2220 Male, age 76, midline 117.1
Periaquaductal grey, anterior
nTPM: 113.6
1947 Male, age 18, unknown 180.3
2502 Female, age 75, unknown 86.7
1795 Male, age 51, unknown 74.0
Periaquaductal grey, dorsal
nTPM: 65.6
2850 Male, age 76, both hemispheres 71.7
1840 Male, age 53, unknown 70.3
1831 Male, age 72, unknown 64.5
2464 Female, age 72, unknown 55.7
Periaquaductal grey, lateral
nTPM: 64.2
2053 Male, age 18, unknown 92.4
2140 Male, age 76, both hemispheres 61.6
2272 Male, age 74, both hemispheres 38.4
Pretectal area
nTPM: 43.3
2825 Male, age 18, unknown 152.1
2224 Female, age 72, unknown 119.6
2667 Female, age 75, unknown 50.5
2316 Male, age 76, right hemisphere 38.0
2273 Male, age 74, both hemispheres 29.0
2407 Male, age 75, both hemispheres 26.2
1944 Female, age 72, unknown 14.3
1816 Male, age 51, unknown 13.7
2007 Male, age 72, unknown 12.6
1817 Female, age 42, unknown 11.1
1815 Male, age 53, unknown 8.9
Red nucleus
nTPM: 50.6
1954 Female, age 42, unknown 96.2
1821 Female, age 72, unknown 75.9
2769 Male, age 72, unknown 70.9
2227 Male, age 72, unknown 69.6
2823 Male, age 76, right hemisphere 50.7
1904 Male, age 53, unknown 49.1
1865 Male, age 51, unknown 45.7
2503 Female, age 72, unknown 38.3
2725 Female, age 75, unknown 38.3
2584 Male, age 75, left hemisphere 36.7
2588 Male, age 74, left hemisphere 30.4
2785 Male, age 18, unknown 5.5
Substantia nigra
nTPM: 32.3
2241 Male, age 72, unknown 52.4
2699 Male, age 18, unknown 40.5
1941 Male, age 53, unknown 36.3
1916 Female, age 42, unknown 33.7
1851 Male, age 51, unknown 31.5
2409 Female, age 72, unknown 31.4
1889 Female, age 72, unknown 28.1
2665 Male, age 74, both hemispheres 27.1
2590 Female, age 75, unknown 24.4
2583 Male, age 75, right hemisphere 17.7
Superior colliculus
nTPM: 33.3
2261 Male, age 18, unknown 63.3
1839 Male, age 51, unknown 56.3
1895 Male, age 76, right hemisphere 55.3
1796 Male, age 53, unknown 48.2
2587 Male, age 74, left hemisphere 39.5
2668 Female, age 75, unknown 23.9
2664 Male, age 75, both hemispheres 22.9
2087 Female, age 72, unknown 10.6
1913 Female, age 42, unknown 8.6
1995 Male, age 72, unknown 4.0
Ventral tegmental area
nTPM: 68.7
2218 Male, age 76, both hemispheres 91.6
2021 Male, age 53, unknown 74.9
1942 Male, age 51, unknown 74.5
2223 Female, age 72, unknown 60.9
1915 Female, age 42, unknown 57.6
2410 Female, age 72, unknown 52.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.6
Samples: 139

Max nTPM: 107.2
Min nTPM: 2.1
Std nTPM: 16.6
Median nTPM: 16.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 107.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 90.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 81.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 75.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 57.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 54.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 53.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 51.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 47.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 47.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.2
FF:10158-103A5 76 years, female 9.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.8
Samples: 4

Max nTPM: 88.5
Min nTPM: 17.0
Sample A Female 88.5
Sample B Female 46.3
Sample C Male 67.5
Sample D Male 17.0
Midbrain
nTPM: 83.0
Samples: 4

Max nTPM: 197.0
Min nTPM: 18.9
Sample A Female 18.9
Sample B Female 52.3
Sample C Male 63.9
Sample D Male 197.0
Periaqueductal gray
nTPM: 61.7
Samples: 3

Max nTPM: 84.1
Min nTPM: 48.6
Sample B Female 48.6
Sample C Male 84.1
Sample D Male 52.4
Superior colliculi
nTPM: 64.6
Samples: 4

Max nTPM: 130.5
Min nTPM: 20.9
Sample A Female 130.5
Sample B Female 58.2
Sample C Male 20.9
Sample D Male 48.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.5
Samples: 4

Max nTPM: 119.1
Min nTPM: 105.8
Sample A Male 105.8
Sample B Male 114.5
Sample C Female 110.5
Sample D Female 119.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.2
68844104 Antisense, RP_050217_02_H07, Mouse strain C57BL/6J (56 days, male) 11.0
75650860 Antisense, RP_060518_02_E01, Mouse strain C57BL/6J (56 days, male) 7.4

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