MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.9 nTPM
HPA Brain:32.0 nTPM
GTEx:24.9 nTPM
FANTOM5:39.6 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:39.2 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.0
2411 Female, age 72, unknown 32.5
2019 Male, age 18, unknown 32.1
2219 Male, age 76, both hemispheres 29.9
1827 Male, age 72, unknown 29.3
1833 Male, age 53, unknown 28.6
2828 Female, age 72, unknown 28.2
1870 Female, age 42, unknown 27.8
1830 Male, age 51, unknown 25.9
2586 Male, age 75, left hemisphere 25.6
2666 Male, age 74, left hemisphere 20.0
Dorsal raphe nucleus
nTPM: 29.5
2750 Male, age 76, both hemispheres 32.8
2298 Female, age 72, unknown 31.5
1828 Male, age 53, unknown 30.3
2047 Male, age 72, unknown 28.2
2016 Female, age 72, unknown 24.7
Inferior colliculus
nTPM: 29.3
2097 Female, age 72, unknown 30.6
1890 Male, age 53, unknown 29.5
1848 Female, age 42, unknown 29.0
2849 Male, age 72, unknown 28.2
Median raphe nucleus
nTPM: 30.8
2220 Male, age 76, midline 30.8
Periaquaductal grey, anterior
nTPM: 31.7
1795 Male, age 51, unknown 32.8
2502 Female, age 75, unknown 31.2
1947 Male, age 18, unknown 31.1
Periaquaductal grey, dorsal
nTPM: 26.8
2464 Female, age 72, unknown 28.4
1840 Male, age 53, unknown 28.1
2850 Male, age 76, both hemispheres 25.4
1831 Male, age 72, unknown 25.2
Periaquaductal grey, lateral
nTPM: 28.1
2272 Male, age 74, both hemispheres 33.7
2140 Male, age 76, both hemispheres 27.5
2053 Male, age 18, unknown 23.0
Pretectal area
nTPM: 31.7
2007 Male, age 72, unknown 37.9
2273 Male, age 74, both hemispheres 35.9
1816 Male, age 51, unknown 34.9
1817 Female, age 42, unknown 34.4
1944 Female, age 72, unknown 34.4
2667 Female, age 75, unknown 31.6
2224 Female, age 72, unknown 30.3
2316 Male, age 76, right hemisphere 30.3
1815 Male, age 53, unknown 28.7
2825 Male, age 18, unknown 25.8
2407 Male, age 75, both hemispheres 24.3
Red nucleus
nTPM: 30.0
2785 Male, age 18, unknown 32.7
1821 Female, age 72, unknown 31.9
2769 Male, age 72, unknown 31.6
2503 Female, age 72, unknown 31.5
2227 Male, age 72, unknown 30.9
2725 Female, age 75, unknown 30.7
1904 Male, age 53, unknown 30.3
1865 Male, age 51, unknown 28.6
1954 Female, age 42, unknown 28.6
2823 Male, age 76, right hemisphere 28.4
2588 Male, age 74, left hemisphere 27.7
2584 Male, age 75, left hemisphere 27.4
Substantia nigra
nTPM: 32.0
1916 Female, age 42, unknown 43.5
1889 Female, age 72, unknown 34.3
1851 Male, age 51, unknown 33.5
2699 Male, age 18, unknown 31.9
1941 Male, age 53, unknown 31.7
2241 Male, age 72, unknown 30.0
2583 Male, age 75, right hemisphere 29.7
2665 Male, age 74, both hemispheres 29.5
2590 Female, age 75, unknown 28.6
2409 Female, age 72, unknown 27.2
Superior colliculus
nTPM: 29.3
2261 Male, age 18, unknown 34.4
1796 Male, age 53, unknown 32.6
2668 Female, age 75, unknown 31.9
2087 Female, age 72, unknown 31.6
2587 Male, age 74, left hemisphere 30.8
1895 Male, age 76, right hemisphere 28.6
1839 Male, age 51, unknown 28.4
2664 Male, age 75, both hemispheres 26.1
1995 Male, age 72, unknown 25.7
1913 Female, age 42, unknown 23.3
Ventral tegmental area
nTPM: 31.3
2218 Male, age 76, both hemispheres 37.0
2410 Female, age 72, unknown 35.4
1915 Female, age 42, unknown 32.1
1942 Male, age 51, unknown 29.6
2223 Female, age 72, unknown 27.1
2021 Male, age 53, unknown 26.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.9
Samples: 139

Max nTPM: 49.9
Min nTPM: 9.4
Std nTPM: 8.0
Median nTPM: 24.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 44.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 42.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 41.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 40.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 40.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 39.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 39.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 38.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 37.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.6
FF:10158-103A5 76 years, female 39.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.7
Samples: 4

Max nTPM: 16.2
Min nTPM: 12.9
Sample A Female 14.0
Sample B Female 12.9
Sample C Male 16.2
Sample D Male 15.7
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 20.5
Min nTPM: 12.9
Sample A Female 12.9
Sample B Female 13.0
Sample C Male 20.5
Sample D Male 16.4
Periaqueductal gray
nTPM: 13.3
Samples: 3

Max nTPM: 13.5
Min nTPM: 13.1
Sample B Female 13.2
Sample C Male 13.1
Sample D Male 13.5
Superior colliculi
nTPM: 15.0
Samples: 4

Max nTPM: 17.4
Min nTPM: 12.2
Sample A Female 13.2
Sample B Female 12.2
Sample C Male 17.2
Sample D Male 17.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 41.2
Min nTPM: 37.3
Sample A Male 39.4
Sample B Male 37.3
Sample C Female 41.2
Sample D Female 38.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68498836 Antisense, RP_050113_02_D10, Mouse strain C57BL/6J (56 days, male) 2.7

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