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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
60.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 60.0
Samples: 152
Max nTPM: 655.4
Min nTPM: 5.8
Std nTPM: 58.8
Median nTPM: 50.4
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
655.4
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
170.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
146.9
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
145.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
144.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
142.5
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
137.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
135.9
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
125.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
125.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
122.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
120.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
119.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
115.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
102.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
100.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
95.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
90.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
89.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
89.2
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
87.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
87.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
85.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
85.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
83.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
83.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
81.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
80.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
80.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
80.1
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
79.9
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
79.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
79.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
79.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
78.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
77.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
76.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
76.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
75.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
75.7
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
73.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
72.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
72.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
72.0
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
71.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
70.9
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
69.5
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
69.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
68.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
66.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
65.9
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
65.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
65.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
64.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
64.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
63.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
62.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
62.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
61.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
61.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
60.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
59.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
58.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
57.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
57.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
56.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
56.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
54.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
53.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
53.6
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
53.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
52.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
51.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
51.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
51.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
50.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
50.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
50.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
49.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
49.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
49.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
49.0
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
48.9
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
48.5
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
47.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
47.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
47.2
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
45.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
45.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
44.5
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
42.7
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
42.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
42.2
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
41.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
40.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
40.4
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
39.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
39.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
38.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
38.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
38.2
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
37.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
37.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
37.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
36.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
35.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
35.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
34.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
34.6
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
34.4
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
34.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
33.6
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
32.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
32.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
32.0
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
31.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
31.5
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
30.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
29.7
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
29.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
28.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
27.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
25.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
25.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
25.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
24.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
23.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
22.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
22.4
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
22.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
21.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
21.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
20.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
19.7
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
18.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
18.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
18.2
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
16.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
16.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
14.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
13.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
13.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
12.5
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
11.8
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
11.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
11.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
11.3
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
8.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
8.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
7.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
7.1
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
5.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
225.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 225.0
Samples: 4
Max nTPM: 281.8
Min nTPM: 198.2
Sample A
Male
281.8
Sample B
Male
198.2
Sample C
Female
199.7
Sample D
Female
220.4
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
