MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:141.1 nTPM
HPA Brain:386.2 nTPM
GTEx:141.1 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Pig:324.5 nTPM
Mouse:380.0 nTPM
Allen mouse:20.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 386.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 179.8
2666 Male, age 74, left hemisphere 363.9
2219 Male, age 76, both hemispheres 244.0
1827 Male, age 72, unknown 211.1
2828 Female, age 72, unknown 179.9
2411 Female, age 72, unknown 179.0
1870 Female, age 42, unknown 172.9
2019 Male, age 18, unknown 129.0
2586 Male, age 75, left hemisphere 123.4
1833 Male, age 53, unknown 110.0
1830 Male, age 51, unknown 85.1
Dorsal raphe nucleus
nTPM: 180.7
2750 Male, age 76, both hemispheres 284.6
2298 Female, age 72, unknown 273.8
2047 Male, age 72, unknown 164.4
1828 Male, age 53, unknown 99.8
2016 Female, age 72, unknown 80.8
Inferior colliculus
nTPM: 82.3
2849 Male, age 72, unknown 91.1
2097 Female, age 72, unknown 90.8
1848 Female, age 42, unknown 80.7
1890 Male, age 53, unknown 66.7
Median raphe nucleus
nTPM: 386.2
2220 Male, age 76, midline 386.2
Periaquaductal grey, anterior
nTPM: 219.5
1795 Male, age 51, unknown 326.8
1947 Male, age 18, unknown 210.9
2502 Female, age 75, unknown 121.0
Periaquaductal grey, dorsal
nTPM: 151.2
2850 Male, age 76, both hemispheres 198.2
1840 Male, age 53, unknown 173.9
1831 Male, age 72, unknown 128.6
2464 Female, age 72, unknown 104.2
Periaquaductal grey, lateral
nTPM: 115.5
2140 Male, age 76, both hemispheres 130.6
2272 Male, age 74, both hemispheres 108.4
2053 Male, age 18, unknown 107.6
Pretectal area
nTPM: 229.4
1815 Male, age 53, unknown 370.1
1817 Female, age 42, unknown 358.8
1816 Male, age 51, unknown 352.6
1944 Female, age 72, unknown 321.7
2007 Male, age 72, unknown 293.1
2224 Female, age 72, unknown 228.2
2667 Female, age 75, unknown 223.6
2825 Male, age 18, unknown 123.5
2407 Male, age 75, both hemispheres 101.0
2316 Male, age 76, right hemisphere 82.2
2273 Male, age 74, both hemispheres 68.3
Red nucleus
nTPM: 49.5
2584 Male, age 75, left hemisphere 155.6
2785 Male, age 18, unknown 128.3
1954 Female, age 42, unknown 42.6
2725 Female, age 75, unknown 36.8
1821 Female, age 72, unknown 36.1
2227 Male, age 72, unknown 32.4
2769 Male, age 72, unknown 31.8
1904 Male, age 53, unknown 31.2
2588 Male, age 74, left hemisphere 30.6
2503 Female, age 72, unknown 25.7
1865 Male, age 51, unknown 25.6
2823 Male, age 76, right hemisphere 17.8
Substantia nigra
nTPM: 176.9
2665 Male, age 74, both hemispheres 261.3
1916 Female, age 42, unknown 234.6
1889 Female, age 72, unknown 227.1
1851 Male, age 51, unknown 202.9
2241 Male, age 72, unknown 201.5
1941 Male, age 53, unknown 166.7
2409 Female, age 72, unknown 161.8
2583 Male, age 75, right hemisphere 130.5
2699 Male, age 18, unknown 98.0
2590 Female, age 75, unknown 84.5
Superior colliculus
nTPM: 172.6
2668 Female, age 75, unknown 450.4
1796 Male, age 53, unknown 261.4
2087 Female, age 72, unknown 245.2
2261 Male, age 18, unknown 161.2
1913 Female, age 42, unknown 138.9
1839 Male, age 51, unknown 110.4
1895 Male, age 76, right hemisphere 96.7
1995 Male, age 72, unknown 93.5
2664 Male, age 75, both hemispheres 92.9
2587 Male, age 74, left hemisphere 75.4
Ventral tegmental area
nTPM: 212.8
2218 Male, age 76, both hemispheres 340.0
1942 Male, age 51, unknown 225.7
1915 Female, age 42, unknown 219.7
2021 Male, age 53, unknown 187.3
2410 Female, age 72, unknown 172.8
2223 Female, age 72, unknown 131.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 141.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 141.1
Samples: 139

Max nTPM: 539.0
Min nTPM: 10.3
Std nTPM: 124.3
Median nTPM: 87.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 539.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 501.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 489.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 479.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 476.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 412.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 407.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 399.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 387.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 379.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 366.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.8
FF:10158-103A5 76 years, female 22.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 324.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 281.0
Samples: 4

Max nTPM: 456.7
Min nTPM: 84.2
Sample A Female 377.5
Sample B Female 205.5
Sample C Male 456.7
Sample D Male 84.2
Midbrain
nTPM: 309.2
Samples: 4

Max nTPM: 514.8
Min nTPM: 45.1
Sample A Female 45.1
Sample B Female 316.4
Sample C Male 514.8
Sample D Male 360.6
Periaqueductal gray
nTPM: 324.5
Samples: 3

Max nTPM: 439.7
Min nTPM: 257.1
Sample B Female 257.1
Sample C Male 439.7
Sample D Male 276.7
Superior colliculi
nTPM: 272.5
Samples: 4

Max nTPM: 381.1
Min nTPM: 130.4
Sample A Female 381.1
Sample B Female 130.4
Sample C Male 298.7
Sample D Male 279.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 380.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 380.0
Samples: 4

Max nTPM: 403.3
Min nTPM: 352.7
Sample A Male 394.3
Sample B Male 369.8
Sample C Female 352.7
Sample D Female 403.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.0
79669511 Antisense, RP_071204_01_C11, Mouse strain C57BL/6J (56 days, male) 22.5
70928270 Antisense, RP_050725_02_C05, Mouse strain C57BL/6J (56 days, male) 17.5

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