MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.5 nTPM
HPA Brain:25.0 nTPM
GTEx:4.5 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:21.5 nTPM
Mouse:9.3 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.3
2219 Male, age 76, both hemispheres 19.1
1827 Male, age 72, unknown 17.2
2019 Male, age 18, unknown 15.6
2411 Female, age 72, unknown 15.3
2666 Male, age 74, left hemisphere 15.1
2586 Male, age 75, left hemisphere 13.8
1833 Male, age 53, unknown 13.1
1870 Female, age 42, unknown 11.7
1830 Male, age 51, unknown 11.1
2828 Female, age 72, unknown 11.1
Dorsal raphe nucleus
nTPM: 16.4
2298 Female, age 72, unknown 22.1
2047 Male, age 72, unknown 17.4
1828 Male, age 53, unknown 15.3
2750 Male, age 76, both hemispheres 15.2
2016 Female, age 72, unknown 12.0
Inferior colliculus
nTPM: 15.8
2097 Female, age 72, unknown 19.5
2849 Male, age 72, unknown 14.9
1848 Female, age 42, unknown 14.5
1890 Male, age 53, unknown 14.2
Median raphe nucleus
nTPM: 21.4
2220 Male, age 76, midline 21.4
Periaquaductal grey, anterior
nTPM: 18.1
2502 Female, age 75, unknown 23.2
1795 Male, age 51, unknown 17.0
1947 Male, age 18, unknown 14.2
Periaquaductal grey, dorsal
nTPM: 18.4
1840 Male, age 53, unknown 24.0
2850 Male, age 76, both hemispheres 18.2
1831 Male, age 72, unknown 16.2
2464 Female, age 72, unknown 15.4
Periaquaductal grey, lateral
nTPM: 15.9
2053 Male, age 18, unknown 18.5
2140 Male, age 76, both hemispheres 14.9
2272 Male, age 74, both hemispheres 14.3
Pretectal area
nTPM: 19.5
1944 Female, age 72, unknown 31.9
1816 Male, age 51, unknown 27.8
2667 Female, age 75, unknown 21.6
2224 Female, age 72, unknown 19.4
2407 Male, age 75, both hemispheres 18.3
1817 Female, age 42, unknown 18.2
2273 Male, age 74, both hemispheres 17.7
1815 Male, age 53, unknown 16.3
2007 Male, age 72, unknown 16.3
2825 Male, age 18, unknown 15.6
2316 Male, age 76, right hemisphere 11.7
Red nucleus
nTPM: 15.0
1821 Female, age 72, unknown 24.4
1954 Female, age 42, unknown 20.2
1904 Male, age 53, unknown 18.1
1865 Male, age 51, unknown 15.9
2725 Female, age 75, unknown 14.7
2769 Male, age 72, unknown 14.1
2227 Male, age 72, unknown 13.6
2785 Male, age 18, unknown 12.9
2584 Male, age 75, left hemisphere 12.6
2503 Female, age 72, unknown 12.0
2823 Male, age 76, right hemisphere 11.6
2588 Male, age 74, left hemisphere 9.5
Substantia nigra
nTPM: 25.0
1916 Female, age 42, unknown 46.3
2241 Male, age 72, unknown 28.5
1851 Male, age 51, unknown 27.2
2409 Female, age 72, unknown 26.2
1941 Male, age 53, unknown 25.2
2699 Male, age 18, unknown 23.8
1889 Female, age 72, unknown 21.6
2665 Male, age 74, both hemispheres 18.6
2583 Male, age 75, right hemisphere 17.7
2590 Female, age 75, unknown 14.6
Superior colliculus
nTPM: 18.0
2087 Female, age 72, unknown 27.2
2261 Male, age 18, unknown 23.3
2668 Female, age 75, unknown 19.0
1796 Male, age 53, unknown 18.3
1913 Female, age 42, unknown 17.3
1995 Male, age 72, unknown 16.8
2664 Male, age 75, both hemispheres 16.5
1839 Male, age 51, unknown 14.4
1895 Male, age 76, right hemisphere 14.4
2587 Male, age 74, left hemisphere 13.2
Ventral tegmental area
nTPM: 23.1
2410 Female, age 72, unknown 29.5
2218 Male, age 76, both hemispheres 26.6
1915 Female, age 42, unknown 26.2
1942 Male, age 51, unknown 19.8
2223 Female, age 72, unknown 18.2
2021 Male, age 53, unknown 18.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.5
Samples: 139

Max nTPM: 17.0
Min nTPM: 1.0
Std nTPM: 2.8
Median nTPM: 3.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 15.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 12.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 11.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 9.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 9.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 9.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 9.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 9.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 9.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 8.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.9
Samples: 4

Max nTPM: 22.3
Min nTPM: 4.7
Sample A Female 20.4
Sample B Female 12.0
Sample C Male 22.3
Sample D Male 4.7
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 42.4
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 11.7
Sample C Male 42.4
Sample D Male 22.5
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 16.0
Min nTPM: 11.9
Sample B Female 11.9
Sample C Male 16.0
Sample D Male 13.5
Superior colliculi
nTPM: 21.0
Samples: 4

Max nTPM: 34.7
Min nTPM: 13.0
Sample A Female 14.6
Sample B Female 13.0
Sample C Male 34.7
Sample D Male 21.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.5
Sample A Male 7.5
Sample B Male 9.8
Sample C Female 10.5
Sample D Female 9.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69014997 Antisense, RP_050310_02_B05, Mouse strain C57BL/6J (56 days, male) 0.4

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