MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.9 nTPM
HPA Brain:60.4 nTPM
GTEx:102.9 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:56.1 nTPM
Mouse:90.5 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.1
1827 Male, age 72, unknown 59.1
2586 Male, age 75, left hemisphere 50.3
1870 Female, age 42, unknown 47.7
2666 Male, age 74, left hemisphere 46.5
2411 Female, age 72, unknown 45.4
2219 Male, age 76, both hemispheres 43.3
2828 Female, age 72, unknown 41.1
2019 Male, age 18, unknown 41.0
1833 Male, age 53, unknown 40.2
1830 Male, age 51, unknown 36.6
Dorsal raphe nucleus
nTPM: 57.2
2298 Female, age 72, unknown 82.5
2047 Male, age 72, unknown 56.8
1828 Male, age 53, unknown 55.9
2016 Female, age 72, unknown 48.2
2750 Male, age 76, both hemispheres 42.5
Inferior colliculus
nTPM: 46.8
2097 Female, age 72, unknown 59.1
1848 Female, age 42, unknown 43.6
1890 Male, age 53, unknown 43.5
2849 Male, age 72, unknown 41.0
Median raphe nucleus
nTPM: 60.4
2220 Male, age 76, midline 60.4
Periaquaductal grey, anterior
nTPM: 52.7
1795 Male, age 51, unknown 59.8
1947 Male, age 18, unknown 56.8
2502 Female, age 75, unknown 41.5
Periaquaductal grey, dorsal
nTPM: 47.7
1840 Male, age 53, unknown 56.9
2850 Male, age 76, both hemispheres 48.8
1831 Male, age 72, unknown 45.8
2464 Female, age 72, unknown 39.4
Periaquaductal grey, lateral
nTPM: 52.0
2272 Male, age 74, both hemispheres 54.9
2053 Male, age 18, unknown 51.4
2140 Male, age 76, both hemispheres 49.5
Pretectal area
nTPM: 51.7
2224 Female, age 72, unknown 63.5
1816 Male, age 51, unknown 62.1
2273 Male, age 74, both hemispheres 56.0
1817 Female, age 42, unknown 52.3
2825 Male, age 18, unknown 52.1
1944 Female, age 72, unknown 51.2
2007 Male, age 72, unknown 50.4
2667 Female, age 75, unknown 49.1
1815 Male, age 53, unknown 48.3
2316 Male, age 76, right hemisphere 45.1
2407 Male, age 75, both hemispheres 38.1
Red nucleus
nTPM: 42.1
2725 Female, age 75, unknown 59.0
1821 Female, age 72, unknown 52.8
2503 Female, age 72, unknown 46.5
2785 Male, age 18, unknown 41.6
2227 Male, age 72, unknown 39.3
2823 Male, age 76, right hemisphere 39.2
2584 Male, age 75, left hemisphere 38.9
2769 Male, age 72, unknown 38.9
2588 Male, age 74, left hemisphere 38.7
1954 Female, age 42, unknown 38.1
1865 Male, age 51, unknown 37.7
1904 Male, age 53, unknown 34.6
Substantia nigra
nTPM: 55.8
1916 Female, age 42, unknown 71.4
2241 Male, age 72, unknown 67.9
1851 Male, age 51, unknown 60.0
1941 Male, age 53, unknown 58.6
1889 Female, age 72, unknown 54.3
2409 Female, age 72, unknown 51.8
2590 Female, age 75, unknown 50.5
2699 Male, age 18, unknown 49.0
2583 Male, age 75, right hemisphere 47.6
2665 Male, age 74, both hemispheres 47.1
Superior colliculus
nTPM: 45.1
1796 Male, age 53, unknown 57.1
2261 Male, age 18, unknown 50.2
2587 Male, age 74, left hemisphere 49.8
2668 Female, age 75, unknown 45.2
1895 Male, age 76, right hemisphere 44.5
2087 Female, age 72, unknown 43.9
1839 Male, age 51, unknown 43.4
1913 Female, age 42, unknown 40.9
2664 Male, age 75, both hemispheres 40.2
1995 Male, age 72, unknown 36.4
Ventral tegmental area
nTPM: 52.7
1915 Female, age 42, unknown 64.3
2410 Female, age 72, unknown 52.7
2223 Female, age 72, unknown 51.7
2218 Male, age 76, both hemispheres 50.5
2021 Male, age 53, unknown 48.6
1942 Male, age 51, unknown 48.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 102.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.9
Samples: 139

Max nTPM: 187.0
Min nTPM: 48.8
Std nTPM: 30.1
Median nTPM: 101.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 187.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 182.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 181.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 170.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 169.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 168.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 168.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 158.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 157.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 156.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 154.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.1
Samples: 4

Max nTPM: 91.3
Min nTPM: 26.5
Sample A Female 91.3
Sample B Female 40.8
Sample C Male 65.9
Sample D Male 26.5
Midbrain
nTPM: 47.7
Samples: 4

Max nTPM: 53.9
Min nTPM: 40.6
Sample A Female 40.6
Sample B Female 48.5
Sample C Male 47.8
Sample D Male 53.9
Periaqueductal gray
nTPM: 47.7
Samples: 3

Max nTPM: 58.5
Min nTPM: 41.2
Sample B Female 43.3
Sample C Male 58.5
Sample D Male 41.2
Superior colliculi
nTPM: 51.2
Samples: 4

Max nTPM: 79.6
Min nTPM: 34.2
Sample A Female 79.6
Sample B Female 34.2
Sample C Male 43.4
Sample D Male 47.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 90.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.6
Samples: 4

Max nTPM: 97.1
Min nTPM: 83.1
Sample A Male 91.7
Sample B Male 90.3
Sample C Female 83.1
Sample D Female 97.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
74357594 Antisense, RP_060117_01_A09, Mouse strain C57BL/6J (56 days, male) 0.7

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