MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.9 nTPM
HPA Brain:26.9 nTPM
GTEx:31.9 nTPM
FANTOM5:15.8 Scaled Tags Per Million
Pig:23.5 nTPM
Mouse:18.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
1827 Male, age 72, unknown 26.8
2411 Female, age 72, unknown 26.6
2219 Male, age 76, both hemispheres 26.0
2019 Male, age 18, unknown 24.4
1833 Male, age 53, unknown 24.1
1870 Female, age 42, unknown 24.1
2828 Female, age 72, unknown 24.0
2586 Male, age 75, left hemisphere 23.1
1830 Male, age 51, unknown 20.5
2666 Male, age 74, left hemisphere 18.7
Dorsal raphe nucleus
nTPM: 25.3
2298 Female, age 72, unknown 31.9
2047 Male, age 72, unknown 25.8
1828 Male, age 53, unknown 25.2
2750 Male, age 76, both hemispheres 24.3
2016 Female, age 72, unknown 19.2
Inferior colliculus
nTPM: 26.6
2097 Female, age 72, unknown 28.2
2849 Male, age 72, unknown 26.8
1848 Female, age 42, unknown 26.5
1890 Male, age 53, unknown 24.8
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Periaquaductal grey, anterior
nTPM: 24.6
1795 Male, age 51, unknown 26.0
1947 Male, age 18, unknown 25.2
2502 Female, age 75, unknown 22.5
Periaquaductal grey, dorsal
nTPM: 20.4
1840 Male, age 53, unknown 22.2
2850 Male, age 76, both hemispheres 21.1
1831 Male, age 72, unknown 19.8
2464 Female, age 72, unknown 18.6
Periaquaductal grey, lateral
nTPM: 22.3
2272 Male, age 74, both hemispheres 26.6
2053 Male, age 18, unknown 20.8
2140 Male, age 76, both hemispheres 19.5
Pretectal area
nTPM: 26.0
1817 Female, age 42, unknown 30.9
2667 Female, age 75, unknown 29.8
2007 Male, age 72, unknown 29.5
1944 Female, age 72, unknown 28.9
1816 Male, age 51, unknown 27.9
2224 Female, age 72, unknown 25.3
2273 Male, age 74, both hemispheres 24.9
1815 Male, age 53, unknown 24.6
2316 Male, age 76, right hemisphere 22.1
2825 Male, age 18, unknown 21.3
2407 Male, age 75, both hemispheres 20.9
Red nucleus
nTPM: 22.5
1821 Female, age 72, unknown 27.5
2785 Male, age 18, unknown 26.8
2725 Female, age 75, unknown 26.0
2503 Female, age 72, unknown 24.4
1954 Female, age 42, unknown 22.1
2227 Male, age 72, unknown 21.3
1865 Male, age 51, unknown 21.0
2584 Male, age 75, left hemisphere 20.8
2769 Male, age 72, unknown 20.4
2588 Male, age 74, left hemisphere 20.2
2823 Male, age 76, right hemisphere 20.0
1904 Male, age 53, unknown 19.8
Substantia nigra
nTPM: 24.1
1916 Female, age 42, unknown 32.5
1889 Female, age 72, unknown 26.9
1941 Male, age 53, unknown 26.9
1851 Male, age 51, unknown 25.9
2241 Male, age 72, unknown 23.9
2699 Male, age 18, unknown 22.6
2583 Male, age 75, right hemisphere 22.2
2665 Male, age 74, both hemispheres 20.9
2409 Female, age 72, unknown 20.2
2590 Female, age 75, unknown 18.8
Superior colliculus
nTPM: 22.9
1796 Male, age 53, unknown 28.1
1895 Male, age 76, right hemisphere 25.7
2261 Male, age 18, unknown 24.4
1839 Male, age 51, unknown 23.4
2668 Female, age 75, unknown 23.3
2587 Male, age 74, left hemisphere 22.4
1913 Female, age 42, unknown 21.3
2087 Female, age 72, unknown 21.1
1995 Male, age 72, unknown 20.0
2664 Male, age 75, both hemispheres 19.6
Ventral tegmental area
nTPM: 24.9
2218 Male, age 76, both hemispheres 27.9
2410 Female, age 72, unknown 27.4
1915 Female, age 42, unknown 26.6
1942 Male, age 51, unknown 23.7
2223 Female, age 72, unknown 23.5
2021 Male, age 53, unknown 20.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.9
Samples: 139

Max nTPM: 67.8
Min nTPM: 14.4
Std nTPM: 7.9
Median nTPM: 30.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 67.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 52.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 49.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 47.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 46.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 46.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 45.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 44.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 44.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 43.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.8
FF:10158-103A5 76 years, female 15.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.3
Samples: 4

Max nTPM: 29.6
Min nTPM: 16.8
Sample A Female 29.6
Sample B Female 16.8
Sample C Male 19.5
Sample D Male 19.2
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 28.1
Min nTPM: 21.5
Sample A Female 28.1
Sample B Female 22.8
Sample C Male 21.5
Sample D Male 21.5
Periaqueductal gray
nTPM: 19.8
Samples: 3

Max nTPM: 21.2
Min nTPM: 18.9
Sample B Female 19.2
Sample C Male 21.2
Sample D Male 18.9
Superior colliculi
nTPM: 22.1
Samples: 4

Max nTPM: 28.9
Min nTPM: 17.5
Sample A Female 28.9
Sample B Female 17.5
Sample C Male 21.1
Sample D Male 21.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.4
Samples: 4

Max nTPM: 21.3
Min nTPM: 16.1
Sample A Male 21.3
Sample B Male 16.7
Sample C Female 16.1
Sample D Female 19.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
686220 Antisense, RP_040916_01_C06, Mouse strain C57BL/6J (56 days, male) 0.1

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