MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.0 nTPM
HPA Brain:14.1 nTPM
GTEx:2.0 nTPM
FANTOM5:2.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.3
2219 Male, age 76, both hemispheres 5.3
2019 Male, age 18, unknown 4.0
1827 Male, age 72, unknown 3.6
1830 Male, age 51, unknown 3.5
1833 Male, age 53, unknown 3.4
2828 Female, age 72, unknown 3.0
1870 Female, age 42, unknown 2.9
2586 Male, age 75, left hemisphere 2.8
2666 Male, age 74, left hemisphere 2.4
2411 Female, age 72, unknown 2.1
Dorsal raphe nucleus
nTPM: 8.6
2016 Female, age 72, unknown 14.7
2298 Female, age 72, unknown 13.5
1828 Male, age 53, unknown 8.0
2047 Male, age 72, unknown 3.4
2750 Male, age 76, both hemispheres 3.3
Inferior colliculus
nTPM: 3.5
2849 Male, age 72, unknown 5.0
1890 Male, age 53, unknown 3.4
1848 Female, age 42, unknown 2.7
2097 Female, age 72, unknown 2.7
Median raphe nucleus
nTPM: 2.8
2220 Male, age 76, midline 2.8
Periaquaductal grey, anterior
nTPM: 6.4
1795 Male, age 51, unknown 10.7
2502 Female, age 75, unknown 4.9
1947 Male, age 18, unknown 3.6
Periaquaductal grey, dorsal
nTPM: 11.4
2850 Male, age 76, both hemispheres 22.2
1840 Male, age 53, unknown 10.7
1831 Male, age 72, unknown 6.9
2464 Female, age 72, unknown 5.6
Periaquaductal grey, lateral
nTPM: 14.1
2272 Male, age 74, both hemispheres 22.7
2140 Male, age 76, both hemispheres 14.3
2053 Male, age 18, unknown 5.2
Pretectal area
nTPM: 5.2
2273 Male, age 74, both hemispheres 17.8
2224 Female, age 72, unknown 9.4
2825 Male, age 18, unknown 5.3
2407 Male, age 75, both hemispheres 4.7
2667 Female, age 75, unknown 4.2
2316 Male, age 76, right hemisphere 3.6
2007 Male, age 72, unknown 2.8
1816 Male, age 51, unknown 2.7
1815 Male, age 53, unknown 2.6
1817 Female, age 42, unknown 2.5
1944 Female, age 72, unknown 2.1
Red nucleus
nTPM: 3.0
2725 Female, age 75, unknown 4.1
2769 Male, age 72, unknown 3.9
2785 Male, age 18, unknown 3.4
2823 Male, age 76, right hemisphere 3.4
2503 Female, age 72, unknown 3.2
2584 Male, age 75, left hemisphere 3.1
1865 Male, age 51, unknown 2.9
1904 Male, age 53, unknown 2.9
2227 Male, age 72, unknown 2.9
1954 Female, age 42, unknown 2.5
1821 Female, age 72, unknown 2.0
2588 Male, age 74, left hemisphere 1.7
Substantia nigra
nTPM: 3.4
2699 Male, age 18, unknown 7.5
2409 Female, age 72, unknown 4.3
2590 Female, age 75, unknown 3.5
1851 Male, age 51, unknown 3.1
1941 Male, age 53, unknown 3.1
2583 Male, age 75, right hemisphere 2.7
2241 Male, age 72, unknown 2.6
1916 Female, age 42, unknown 2.5
1889 Female, age 72, unknown 2.2
2665 Male, age 74, both hemispheres 2.1
Superior colliculus
nTPM: 4.8
1995 Male, age 72, unknown 11.2
2587 Male, age 74, left hemisphere 6.6
1913 Female, age 42, unknown 5.2
2261 Male, age 18, unknown 4.3
1796 Male, age 53, unknown 3.9
2664 Male, age 75, both hemispheres 3.9
2668 Female, age 75, unknown 3.6
1839 Male, age 51, unknown 3.4
1895 Male, age 76, right hemisphere 3.0
2087 Female, age 72, unknown 2.9
Ventral tegmental area
nTPM: 3.2
2021 Male, age 53, unknown 4.7
1942 Male, age 51, unknown 3.2
1915 Female, age 42, unknown 3.1
2223 Female, age 72, unknown 3.0
2218 Male, age 76, both hemispheres 2.7
2410 Female, age 72, unknown 2.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.0
Samples: 139

Max nTPM: 35.6
Min nTPM: 0.4
Std nTPM: 2.9
Median nTPM: 1.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 35.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 4.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 4.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 3.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 3.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 3.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 3.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.3
FF:10158-103A5 76 years, female 2.3

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