MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.8 nTPM
HPA Brain:55.2 nTPM
GTEx:5.8 nTPM
FANTOM5:82.0 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:4.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.0
2019 Male, age 18, unknown 61.0
2828 Female, age 72, unknown 57.9
2666 Male, age 74, left hemisphere 56.7
1830 Male, age 51, unknown 52.0
1833 Male, age 53, unknown 50.6
1870 Female, age 42, unknown 47.4
2586 Male, age 75, left hemisphere 46.0
1827 Male, age 72, unknown 44.9
2411 Female, age 72, unknown 40.7
2219 Male, age 76, both hemispheres 33.0
Dorsal raphe nucleus
nTPM: 43.4
2016 Female, age 72, unknown 49.2
2047 Male, age 72, unknown 47.4
1828 Male, age 53, unknown 44.2
2750 Male, age 76, both hemispheres 40.2
2298 Female, age 72, unknown 35.9
Inferior colliculus
nTPM: 49.4
1890 Male, age 53, unknown 53.8
1848 Female, age 42, unknown 52.2
2849 Male, age 72, unknown 49.4
2097 Female, age 72, unknown 42.1
Median raphe nucleus
nTPM: 42.2
2220 Male, age 76, midline 42.2
Periaquaductal grey, anterior
nTPM: 38.4
2502 Female, age 75, unknown 39.4
1795 Male, age 51, unknown 39.0
1947 Male, age 18, unknown 36.8
Periaquaductal grey, dorsal
nTPM: 45.1
2850 Male, age 76, both hemispheres 55.6
1831 Male, age 72, unknown 47.3
2464 Female, age 72, unknown 42.3
1840 Male, age 53, unknown 35.4
Periaquaductal grey, lateral
nTPM: 48.1
2140 Male, age 76, both hemispheres 53.0
2272 Male, age 74, both hemispheres 46.8
2053 Male, age 18, unknown 44.5
Pretectal area
nTPM: 51.1
1944 Female, age 72, unknown 66.2
1817 Female, age 42, unknown 61.5
1815 Male, age 53, unknown 57.8
1816 Male, age 51, unknown 55.6
2007 Male, age 72, unknown 54.5
2667 Female, age 75, unknown 51.4
2407 Male, age 75, both hemispheres 49.3
2316 Male, age 76, right hemisphere 47.3
2273 Male, age 74, both hemispheres 44.3
2224 Female, age 72, unknown 37.7
2825 Male, age 18, unknown 36.5
Red nucleus
nTPM: 55.2
1865 Male, age 51, unknown 66.2
2785 Male, age 18, unknown 65.0
1904 Male, age 53, unknown 58.3
1821 Female, age 72, unknown 56.4
2823 Male, age 76, right hemisphere 55.6
1954 Female, age 42, unknown 55.2
2503 Female, age 72, unknown 55.1
2588 Male, age 74, left hemisphere 53.1
2725 Female, age 75, unknown 52.9
2227 Male, age 72, unknown 51.4
2769 Male, age 72, unknown 50.0
2584 Male, age 75, left hemisphere 43.8
Substantia nigra
nTPM: 51.8
2665 Male, age 74, both hemispheres 60.7
2409 Female, age 72, unknown 59.2
2699 Male, age 18, unknown 58.7
1916 Female, age 42, unknown 54.7
2583 Male, age 75, right hemisphere 50.6
1889 Female, age 72, unknown 50.3
1941 Male, age 53, unknown 48.7
1851 Male, age 51, unknown 47.6
2590 Female, age 75, unknown 47.3
2241 Male, age 72, unknown 40.1
Superior colliculus
nTPM: 52.4
1995 Male, age 72, unknown 66.1
2087 Female, age 72, unknown 64.4
1913 Female, age 42, unknown 60.5
2668 Female, age 75, unknown 55.8
2587 Male, age 74, left hemisphere 51.0
1796 Male, age 53, unknown 48.8
2261 Male, age 18, unknown 46.9
1895 Male, age 76, right hemisphere 45.6
2664 Male, age 75, both hemispheres 43.0
1839 Male, age 51, unknown 41.6
Ventral tegmental area
nTPM: 45.4
2218 Male, age 76, both hemispheres 49.2
1915 Female, age 42, unknown 46.6
2410 Female, age 72, unknown 45.4
2223 Female, age 72, unknown 45.0
2021 Male, age 53, unknown 44.5
1942 Male, age 51, unknown 41.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.8
Samples: 139

Max nTPM: 12.7
Min nTPM: 3.2
Std nTPM: 1.5
Median nTPM: 5.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 12.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 12.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 10.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 9.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 9.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 8.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 8.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 8.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 8.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 8.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 8.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.0
FF:10158-103A5 76 years, female 82.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.5
Samples: 4

Max nTPM: 29.8
Min nTPM: 18.8
Sample A Female 18.8
Sample B Female 29.8
Sample C Male 20.7
Sample D Male 20.5
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 24.0
Min nTPM: 19.2
Sample A Female 24.0
Sample B Female 19.2
Sample C Male 19.9
Sample D Male 19.3
Periaqueductal gray
nTPM: 21.8
Samples: 3

Max nTPM: 22.8
Min nTPM: 20.9
Sample B Female 20.9
Sample C Male 22.8
Sample D Male 21.7
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 28.3
Min nTPM: 17.5
Sample A Female 23.4
Sample B Female 28.3
Sample C Male 17.5
Sample D Male 21.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.3
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.8
Sample A Male 3.8
Sample B Male 4.1
Sample C Female 4.9
Sample D Female 4.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73870509 Antisense, RP_051212_04_B08, Mouse strain C57BL/6J (56 days, male) 0.1
71763480 Antisense, RP_050921_02_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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