MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:665.3 nTPM
HPA Brain:539.1 nTPM
GTEx:665.3 nTPM
FANTOM5:902.4 Scaled Tags Per Million
Mouse:923.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 539.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 479.2
2019 Male, age 18, unknown 546.2
2666 Male, age 74, left hemisphere 537.4
1827 Male, age 72, unknown 529.7
2411 Female, age 72, unknown 515.5
1870 Female, age 42, unknown 509.9
2828 Female, age 72, unknown 509.6
2219 Male, age 76, both hemispheres 432.1
1833 Male, age 53, unknown 420.5
1830 Male, age 51, unknown 416.3
2586 Male, age 75, left hemisphere 374.9
Dorsal raphe nucleus
nTPM: 454.6
2298 Female, age 72, unknown 514.0
2750 Male, age 76, both hemispheres 506.6
2047 Male, age 72, unknown 447.8
1828 Male, age 53, unknown 427.2
2016 Female, age 72, unknown 377.3
Inferior colliculus
nTPM: 422.4
2097 Female, age 72, unknown 439.5
1848 Female, age 42, unknown 438.9
1890 Male, age 53, unknown 411.6
2849 Male, age 72, unknown 399.7
Median raphe nucleus
nTPM: 504.3
2220 Male, age 76, midline 504.3
Periaquaductal grey, anterior
nTPM: 495.4
1795 Male, age 51, unknown 523.5
1947 Male, age 18, unknown 510.4
2502 Female, age 75, unknown 452.3
Periaquaductal grey, dorsal
nTPM: 404.7
2850 Male, age 76, both hemispheres 428.2
1831 Male, age 72, unknown 422.8
1840 Male, age 53, unknown 411.2
2464 Female, age 72, unknown 356.5
Periaquaductal grey, lateral
nTPM: 432.9
2272 Male, age 74, both hemispheres 463.4
2140 Male, age 76, both hemispheres 420.1
2053 Male, age 18, unknown 415.3
Pretectal area
nTPM: 539.1
1817 Female, age 42, unknown 676.0
1944 Female, age 72, unknown 641.8
2007 Male, age 72, unknown 636.7
1816 Male, age 51, unknown 614.9
1815 Male, age 53, unknown 577.0
2667 Female, age 75, unknown 534.5
2407 Male, age 75, both hemispheres 527.0
2273 Male, age 74, both hemispheres 456.9
2224 Female, age 72, unknown 437.0
2316 Male, age 76, right hemisphere 419.4
2825 Male, age 18, unknown 409.2
Red nucleus
nTPM: 495.5
2725 Female, age 75, unknown 578.5
2785 Male, age 18, unknown 562.6
1865 Male, age 51, unknown 534.2
1821 Female, age 72, unknown 500.4
1904 Male, age 53, unknown 491.4
2503 Female, age 72, unknown 487.7
2227 Male, age 72, unknown 483.0
2769 Male, age 72, unknown 481.7
1954 Female, age 42, unknown 481.0
2584 Male, age 75, left hemisphere 461.0
2823 Male, age 76, right hemisphere 448.3
2588 Male, age 74, left hemisphere 436.5
Substantia nigra
nTPM: 503.9
1889 Female, age 72, unknown 603.9
1916 Female, age 42, unknown 599.9
1941 Male, age 53, unknown 598.6
1851 Male, age 51, unknown 538.6
2665 Male, age 74, both hemispheres 492.2
2583 Male, age 75, right hemisphere 463.6
2699 Male, age 18, unknown 451.9
2590 Female, age 75, unknown 443.5
2241 Male, age 72, unknown 426.3
2409 Female, age 72, unknown 420.0
Superior colliculus
nTPM: 487.5
2087 Female, age 72, unknown 580.4
2261 Male, age 18, unknown 534.9
1796 Male, age 53, unknown 527.8
2668 Female, age 75, unknown 505.4
1913 Female, age 42, unknown 504.4
2587 Male, age 74, left hemisphere 493.3
1895 Male, age 76, right hemisphere 460.8
1995 Male, age 72, unknown 452.6
1839 Male, age 51, unknown 426.8
2664 Male, age 75, both hemispheres 388.9
Ventral tegmental area
nTPM: 501.0
2218 Male, age 76, both hemispheres 553.4
2410 Female, age 72, unknown 541.8
1915 Female, age 42, unknown 518.1
2223 Female, age 72, unknown 516.2
1942 Male, age 51, unknown 451.7
2021 Male, age 53, unknown 424.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 665.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 665.3
Samples: 139

Max nTPM: 1081.6
Min nTPM: 427.8
Std nTPM: 122.6
Median nTPM: 658.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1081.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1072.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1024.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 933.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 907.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 905.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 895.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 877.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 864.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 855.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 855.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 902.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 902.4
FF:10158-103A5 76 years, female 902.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 923.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 923.2
Samples: 4

Max nTPM: 950.7
Min nTPM: 892.7
Sample A Male 908.5
Sample B Male 892.7
Sample C Female 950.7
Sample D Female 940.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70719651 Antisense, RP_050426_02_D11, Mouse strain C57BL/6J (56 days, male) 0.1

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