HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:51.6 nTPM
HPA Brain:51.4 nTPM
GTEx:51.6 nTPM
FANTOM5:27.4 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:60.8 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA046431Antibody CAB008634Antibody CAB069419
Glial cells Not detectedHighNot detected
Neuronal cells Not detectedMediumLow



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 51.4
Sample id Sample description nTPM
Hippocampus
nTPM: 36.5
1898 Male, age 80, left hemisphere 48.1
2621 Female, age 67, right hemisphere 44.5
1855 Male, age 76, left hemisphere 41.9
2148 Female, age 91, left hemisphere 39.0
1911 Female, age 85, right hemisphere 27.1
2529 Female, age 94, left hemisphere 18.5
Dentate gyrus
nTPM: 39.7
1927 Female, age 91, both hemispheres 66.8
2010 Male, age 76, both hemispheres 63.7
2246 Female, age 85, both hemispheres 32.2
2528 Male, age 74, both hemispheres 27.7
2531 Female, age 67, both hemispheres 25.0
2530 Female, age 94, left hemisphere 22.8
Entorhinal gyrus
nTPM: 20.8
2613 Female, age 94, left hemisphere 25.5
1938 Female, age 85, left hemisphere 23.0
2764 Male, age 80, right hemisphere 20.4
2686 Male, age 75, right hemisphere 20.3
2117 Female, age 91, right hemisphere 18.2
1787 Male, age 76, left hemisphere 17.5
Hippocampus, CA1
nTPM: 51.4
2749 Male, age 80, left hemisphere 91.3
1873 Female, age 85, both hemispheres 69.4
2045 Male, age 76, both hemispheres 48.0
2527 Male, age 74, both hemispheres 28.1
2082 Female, age 91, right hemisphere 20.2
Hippocampus, CA2
nTPM: 31.4
1963 Male, age 80, left hemisphere 66.3
1892 Male, age 76, both hemispheres 39.1
2249 Male, age 74, both hemispheres 23.3
2113 Female, age 91, right hemisphere 23.1
2437 Female, age 94, left hemisphere 19.2
1940 Female, age 85, left hemisphere 17.2
Hippocampus, CA3
nTPM: 34.0
2620 Female, age 94, left hemisphere 49.7
2137 Male, age 80, left hemisphere 45.0
1867 Male, age 76, both hemispheres 36.5
1891 Female, age 85, both hemispheres 24.5
2861 Female, age 67, both hemispheres 24.5
2436 Male, age 74, both hemispheres 23.7
Parahippocampal cortex
nTPM: 25.3
2018 Male, age 76, both hemispheres 36.7
1850 Male, age 80, both hemispheres 28.5
2693 Female, age 94, both hemispheres 27.3
2245 Female, age 91, both hemispheres 26.6
2692 Male, age 74, both hemispheres 24.5
2250 Female, age 67, right hemisphere 24.3
1933 Female, age 85, both hemispheres 23.7
1990 Female, age 91, right hemisphere 22.4
2532 Female, age 72, left hemisphere 21.0
2622 Female, age 67, right hemisphere 17.8
Perirhinal gyrus
nTPM: 23.8
1794 Male, age 80, right hemisphere 29.5
1847 Female, age 91, left hemisphere 28.0
1841 Female, age 85, right hemisphere 26.0
2521 Female, age 94, right hemisphere 20.8
2848 Male, age 76, right hemisphere 14.9
Subiculum
nTPM: 22.4
2042 Male, age 76, both hemispheres 31.0
2729 Female, age 91, right hemisphere 28.0
1901 Male, age 80, both hemispheres 26.5
2619 Male, age 74, both hemispheres 18.0
1977 Female, age 85, both hemispheres 17.7
2438 Female, age 94, left hemisphere 13.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 51.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 51.6
Samples: 197

Max nTPM: 326.8
Min nTPM: 7.7
Std nTPM: 46.7
Median nTPM: 35.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 326.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 242.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 178.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 175.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 174.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 173.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 158.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 157.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 155.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 153.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 152.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.4
FF:10169-103B7 60 years, female 43.6
FF:10153-102I9 76 years, female 11.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.4
Pig sample Sample description nTPM
Subiculum
nTPM: 20.8
Samples: 4

Max nTPM: 23.9
Min nTPM: 17.4
Sample A Female 23.9
Sample B Female 20.1
Sample C Male 17.4
Sample D Male 21.6
Dorsal hippocampus
nTPM: 18.9
Samples: 4

Max nTPM: 20.4
Min nTPM: 17.2
Sample A Female 20.1
Sample B Female 20.4
Sample C Male 17.2
Sample D Male 17.9
Entorhinal cortex
nTPM: 28.4
Samples: 4

Max nTPM: 32.1
Min nTPM: 23.5
Sample A Female 29.3
Sample B Female 32.1
Sample C Male 23.5
Sample D Male 28.6
Ventral hippocampus
nTPM: 18.2
Samples: 4

Max nTPM: 19.4
Min nTPM: 17.2
Sample A Female 19.4
Sample B Female 17.5
Sample C Male 18.7
Sample D Male 17.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 60.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 60.8
Samples: 4

Max nTPM: 64.1
Min nTPM: 57.1
Sample A Male 59.1
Sample B Male 62.8
Sample C Female 57.1
Sample D Female 64.1
Hippocampal formation
nTPM: 59.0
Samples: 4

Max nTPM: 62.4
Min nTPM: 52.8
Sample A Male 60.8
Sample B Male 59.9
Sample C Female 62.4
Sample D Female 52.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
70545937 Antisense, RP_050623_03_C05, Mouse strain C57BL/6J (56 days, male) 1.1
73931409 Antisense, RP_051214_04_E01, Mouse strain C57BL/6J (56 days, male) 0.4

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