MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.4 nTPM
HPA Brain:132.2 nTPM
GTEx:2.4 nTPM
FANTOM5:115.1 Scaled Tags Per Million
Pig:131.2 nTPM
Mouse:36.1 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 132.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.4
1827 Male, age 72, unknown 125.1
2411 Female, age 72, unknown 112.1
1870 Female, age 42, unknown 103.2
2219 Male, age 76, both hemispheres 102.5
2586 Male, age 75, left hemisphere 97.6
1833 Male, age 53, unknown 95.0
1830 Male, age 51, unknown 91.5
2666 Male, age 74, left hemisphere 85.8
2828 Female, age 72, unknown 81.5
2019 Male, age 18, unknown 59.5
Dorsal raphe nucleus
nTPM: 98.8
2298 Female, age 72, unknown 109.7
2047 Male, age 72, unknown 107.1
2750 Male, age 76, both hemispheres 94.6
2016 Female, age 72, unknown 91.9
1828 Male, age 53, unknown 90.8
Inferior colliculus
nTPM: 122.4
2097 Female, age 72, unknown 144.3
2849 Male, age 72, unknown 123.5
1848 Female, age 42, unknown 116.3
1890 Male, age 53, unknown 105.6
Median raphe nucleus
nTPM: 99.4
2220 Male, age 76, midline 99.4
Periaquaductal grey, anterior
nTPM: 132.2
1947 Male, age 18, unknown 155.4
2502 Female, age 75, unknown 141.1
1795 Male, age 51, unknown 100.0
Periaquaductal grey, dorsal
nTPM: 117.4
1840 Male, age 53, unknown 147.1
1831 Male, age 72, unknown 121.6
2464 Female, age 72, unknown 111.5
2850 Male, age 76, both hemispheres 89.3
Periaquaductal grey, lateral
nTPM: 100.2
2053 Male, age 18, unknown 130.3
2140 Male, age 76, both hemispheres 91.5
2272 Male, age 74, both hemispheres 78.8
Pretectal area
nTPM: 99.2
2825 Male, age 18, unknown 132.2
2224 Female, age 72, unknown 119.6
2316 Male, age 76, right hemisphere 108.8
1816 Male, age 51, unknown 107.1
2407 Male, age 75, both hemispheres 101.9
2667 Female, age 75, unknown 93.8
2273 Male, age 74, both hemispheres 92.4
1944 Female, age 72, unknown 90.8
1815 Male, age 53, unknown 85.8
2007 Male, age 72, unknown 81.3
1817 Female, age 42, unknown 77.7
Red nucleus
nTPM: 80.5
2584 Male, age 75, left hemisphere 100.3
2588 Male, age 74, left hemisphere 89.5
2725 Female, age 75, unknown 88.7
2503 Female, age 72, unknown 88.5
1954 Female, age 42, unknown 85.2
1821 Female, age 72, unknown 85.0
2823 Male, age 76, right hemisphere 83.5
2227 Male, age 72, unknown 75.2
2769 Male, age 72, unknown 74.0
1904 Male, age 53, unknown 71.9
1865 Male, age 51, unknown 67.7
2785 Male, age 18, unknown 56.2
Substantia nigra
nTPM: 90.9
2241 Male, age 72, unknown 122.7
1941 Male, age 53, unknown 93.4
2409 Female, age 72, unknown 93.1
2583 Male, age 75, right hemisphere 90.4
1851 Male, age 51, unknown 88.7
1916 Female, age 42, unknown 88.5
1889 Female, age 72, unknown 87.5
2665 Male, age 74, both hemispheres 83.8
2590 Female, age 75, unknown 80.9
2699 Male, age 18, unknown 79.7
Superior colliculus
nTPM: 97.4
1839 Male, age 51, unknown 118.0
1895 Male, age 76, right hemisphere 114.5
2261 Male, age 18, unknown 112.1
1796 Male, age 53, unknown 112.0
2664 Male, age 75, both hemispheres 103.5
2587 Male, age 74, left hemisphere 98.5
2668 Female, age 75, unknown 92.2
2087 Female, age 72, unknown 88.4
1913 Female, age 42, unknown 73.1
1995 Male, age 72, unknown 62.1
Ventral tegmental area
nTPM: 98.3
1942 Male, age 51, unknown 115.6
1915 Female, age 42, unknown 101.6
2021 Male, age 53, unknown 99.0
2218 Male, age 76, both hemispheres 96.4
2223 Female, age 72, unknown 89.9
2410 Female, age 72, unknown 87.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.4
Samples: 139

Max nTPM: 5.8
Min nTPM: 0.6
Std nTPM: 0.9
Median nTPM: 2.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 5.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 5.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 5.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 5.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 5.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 4.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 4.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 4.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 4.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 4.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 4.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.1
FF:10158-103A5 76 years, female 115.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 131.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.3
Samples: 4

Max nTPM: 120.8
Min nTPM: 40.4
Sample A Female 112.8
Sample B Female 67.3
Sample C Male 120.8
Sample D Male 40.4
Midbrain
nTPM: 102.0
Samples: 4

Max nTPM: 149.0
Min nTPM: 50.7
Sample A Female 50.7
Sample B Female 112.6
Sample C Male 95.7
Sample D Male 149.0
Periaqueductal gray
nTPM: 131.2
Samples: 3

Max nTPM: 148.4
Min nTPM: 120.4
Sample B Female 124.8
Sample C Male 148.4
Sample D Male 120.4
Superior colliculi
nTPM: 89.0
Samples: 4

Max nTPM: 120.1
Min nTPM: 45.2
Sample A Female 108.3
Sample B Female 45.2
Sample C Male 82.3
Sample D Male 120.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 42.4
Min nTPM: 33.8
Sample A Male 33.8
Sample B Male 42.4
Sample C Female 34.2
Sample D Female 34.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
74750043 Antisense, RP_060220_05_F03, Mouse strain C57BL/6J (56 days, male) 4.0
70566047 Antisense, RP_050628_02_B10, Mouse strain C57BL/6J (56 days, male) 3.7

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