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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
145.5
nTPM
HPA Brain:
85.0
nTPM
GTEx:
145.5
nTPM
FANTOM5:
27.8
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA052623
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
85.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 77.8
1898
Male, age 80, left hemisphere
107.7
2529
Female, age 94, left hemisphere
85.9
2621
Female, age 67, right hemisphere
79.8
2148
Female, age 91, left hemisphere
73.9
1855
Male, age 76, left hemisphere
60.7
1911
Female, age 85, right hemisphere
59.2
Dentate gyrus nTPM: 81.4
2530
Female, age 94, left hemisphere
125.1
1927
Female, age 91, both hemispheres
85.2
2010
Male, age 76, both hemispheres
79.0
2531
Female, age 67, both hemispheres
74.9
2246
Female, age 85, both hemispheres
66.0
2528
Male, age 74, both hemispheres
58.0
Entorhinal gyrus nTPM: 75.9
2764
Male, age 80, right hemisphere
93.4
2613
Female, age 94, left hemisphere
83.8
2686
Male, age 75, right hemisphere
73.9
1787
Male, age 76, left hemisphere
71.9
1938
Female, age 85, left hemisphere
71.8
2117
Female, age 91, right hemisphere
60.7
Hippocampus, CA1 nTPM: 85.0
2749
Male, age 80, left hemisphere
145.7
2527
Male, age 74, both hemispheres
89.2
1873
Female, age 85, both hemispheres
64.9
2082
Female, age 91, right hemisphere
64.1
2045
Male, age 76, both hemispheres
61.2
Hippocampus, CA2 nTPM: 76.4
1963
Male, age 80, left hemisphere
117.0
2437
Female, age 94, left hemisphere
86.4
1892
Male, age 76, both hemispheres
75.0
2249
Male, age 74, both hemispheres
68.0
2113
Female, age 91, right hemisphere
58.9
1940
Female, age 85, left hemisphere
53.1
Hippocampus, CA3 nTPM: 71.4
2861
Female, age 67, both hemispheres
88.6
2137
Male, age 80, left hemisphere
84.6
1867
Male, age 76, both hemispheres
77.7
2436
Male, age 74, both hemispheres
62.8
1891
Female, age 85, both hemispheres
59.8
2620
Female, age 94, left hemisphere
54.7
Parahippocampal cortex nTPM: 68.3
2245
Female, age 91, both hemispheres
84.4
1990
Female, age 91, right hemisphere
78.8
2250
Female, age 67, right hemisphere
75.4
1933
Female, age 85, both hemispheres
70.1
2692
Male, age 74, both hemispheres
67.8
1850
Male, age 80, both hemispheres
66.3
2018
Male, age 76, both hemispheres
65.1
2532
Female, age 72, left hemisphere
63.6
2622
Female, age 67, right hemisphere
62.6
2693
Female, age 94, both hemispheres
49.2
Perirhinal gyrus nTPM: 77.1
1847
Female, age 91, left hemisphere
93.5
1794
Male, age 80, right hemisphere
90.6
2521
Female, age 94, right hemisphere
84.1
1841
Female, age 85, right hemisphere
64.7
2848
Male, age 76, right hemisphere
52.8
Subiculum nTPM: 62.6
1977
Female, age 85, both hemispheres
81.6
1901
Male, age 80, both hemispheres
74.7
2438
Female, age 94, left hemisphere
68.4
2619
Male, age 74, both hemispheres
56.7
2042
Male, age 76, both hemispheres
49.3
2729
Female, age 91, right hemisphere
45.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
145.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 145.5
Samples: 197
Max nTPM: 428.9
Min nTPM: 26.2
Std nTPM: 65.2
Median nTPM: 131.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
428.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
398.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
382.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
370.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
292.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
290.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
289.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
280.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
276.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
275.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
248.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
247.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
246.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
244.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
241.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
228.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
227.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
221.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
220.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
220.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
214.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
214.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
214.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
213.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
212.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
212.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
211.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
211.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
207.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
206.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
205.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
204.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
203.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
198.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
198.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
197.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
196.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
195.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
195.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
195.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
195.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
194.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
193.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
189.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
185.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
183.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
183.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
182.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
182.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
181.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
180.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
180.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
178.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
177.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
175.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
171.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
171.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
170.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
169.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
168.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
167.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
166.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
165.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
165.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
164.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
164.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
162.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
160.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
160.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
159.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
158.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
156.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
152.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
152.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
151.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
151.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
150.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
149.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
149.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
148.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
148.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
147.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
147.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
147.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
147.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
146.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
144.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
144.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
142.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
142.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
141.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
140.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
140.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
139.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
139.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
135.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
135.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
132.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
131.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
130.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
130.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
130.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
129.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
128.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
128.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
127.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
126.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
125.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
124.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
124.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
123.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
122.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
121.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
121.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
121.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
120.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
120.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
119.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
119.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
118.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
114.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
114.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
114.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
113.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
113.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
113.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
113.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
112.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
111.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
111.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
110.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
110.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
109.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
108.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
108.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
107.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
107.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
106.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
105.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
104.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
104.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
104.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
102.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
101.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
99.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
99.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
99.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
99.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
97.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
97.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
96.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
95.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
95.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
93.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
93.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
92.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
92.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
91.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
91.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
90.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
90.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
89.6
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
89.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
88.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
88.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
87.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
87.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
85.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
84.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
83.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
82.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
82.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
82.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
81.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
80.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
79.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
79.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
77.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
77.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
76.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
75.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
73.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
72.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
71.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
70.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
70.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
66.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
63.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
62.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
61.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
60.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
56.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
49.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
47.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
47.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
38.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
26.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.