MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.8 nTPM
HPA Brain:28.1 nTPM
GTEx:20.8 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:23.6 nTPM
Mouse:27.1 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.4
2666 Male, age 74, left hemisphere 32.4
2586 Male, age 75, left hemisphere 32.1
1827 Male, age 72, unknown 24.6
2219 Male, age 76, both hemispheres 23.6
2828 Female, age 72, unknown 22.0
2411 Female, age 72, unknown 21.9
1870 Female, age 42, unknown 20.1
2019 Male, age 18, unknown 19.4
1833 Male, age 53, unknown 18.9
1830 Male, age 51, unknown 18.8
Dorsal raphe nucleus
nTPM: 19.7
2047 Male, age 72, unknown 20.7
1828 Male, age 53, unknown 20.3
2750 Male, age 76, both hemispheres 20.1
2298 Female, age 72, unknown 19.0
2016 Female, age 72, unknown 18.2
Inferior colliculus
nTPM: 20.1
2849 Male, age 72, unknown 20.6
2097 Female, age 72, unknown 20.3
1848 Female, age 42, unknown 19.9
1890 Male, age 53, unknown 19.6
Median raphe nucleus
nTPM: 24.2
2220 Male, age 76, midline 24.2
Periaquaductal grey, anterior
nTPM: 22.5
2502 Female, age 75, unknown 24.9
1795 Male, age 51, unknown 21.9
1947 Male, age 18, unknown 20.6
Periaquaductal grey, dorsal
nTPM: 18.4
2464 Female, age 72, unknown 19.4
1840 Male, age 53, unknown 19.2
2850 Male, age 76, both hemispheres 17.6
1831 Male, age 72, unknown 17.4
Periaquaductal grey, lateral
nTPM: 16.2
2053 Male, age 18, unknown 17.9
2140 Male, age 76, both hemispheres 15.9
2272 Male, age 74, both hemispheres 14.9
Pretectal area
nTPM: 19.4
2007 Male, age 72, unknown 23.9
1816 Male, age 51, unknown 23.3
1815 Male, age 53, unknown 23.0
1817 Female, age 42, unknown 21.9
1944 Female, age 72, unknown 20.3
2825 Male, age 18, unknown 19.5
2407 Male, age 75, both hemispheres 18.9
2224 Female, age 72, unknown 18.6
2316 Male, age 76, right hemisphere 16.8
2667 Female, age 75, unknown 15.5
2273 Male, age 74, both hemispheres 12.4
Red nucleus
nTPM: 24.2
2725 Female, age 75, unknown 31.1
2588 Male, age 74, left hemisphere 30.3
2584 Male, age 75, left hemisphere 28.3
2503 Female, age 72, unknown 27.8
1821 Female, age 72, unknown 25.1
1954 Female, age 42, unknown 22.8
2227 Male, age 72, unknown 22.7
1865 Male, age 51, unknown 22.3
1904 Male, age 53, unknown 21.1
2769 Male, age 72, unknown 21.1
2785 Male, age 18, unknown 20.1
2823 Male, age 76, right hemisphere 18.3
Substantia nigra
nTPM: 28.1
1916 Female, age 42, unknown 39.4
2699 Male, age 18, unknown 34.5
1851 Male, age 51, unknown 31.7
1941 Male, age 53, unknown 31.0
2241 Male, age 72, unknown 26.8
2665 Male, age 74, both hemispheres 26.7
2409 Female, age 72, unknown 23.9
2583 Male, age 75, right hemisphere 22.9
2590 Female, age 75, unknown 22.2
1889 Female, age 72, unknown 22.0
Superior colliculus
nTPM: 20.6
1796 Male, age 53, unknown 24.4
2664 Male, age 75, both hemispheres 22.5
2261 Male, age 18, unknown 22.2
2587 Male, age 74, left hemisphere 21.9
2668 Female, age 75, unknown 21.6
1839 Male, age 51, unknown 19.3
1913 Female, age 42, unknown 19.2
2087 Female, age 72, unknown 18.7
1995 Male, age 72, unknown 18.5
1895 Male, age 76, right hemisphere 17.2
Ventral tegmental area
nTPM: 25.4
1915 Female, age 42, unknown 30.6
2218 Male, age 76, both hemispheres 28.5
2410 Female, age 72, unknown 27.4
1942 Male, age 51, unknown 25.5
2021 Male, age 53, unknown 20.4
2223 Female, age 72, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.8
Samples: 139

Max nTPM: 39.3
Min nTPM: 12.3
Std nTPM: 4.8
Median nTPM: 20.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 39.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 37.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 34.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 33.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 32.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 31.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 30.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 30.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 29.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 29.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 28.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.9
FF:10158-103A5 76 years, female 36.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.1
Samples: 4

Max nTPM: 33.4
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 22.2
Sample C Male 33.4
Sample D Male 20.8
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 25.5
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 25.5
Sample C Male 23.7
Sample D Male 23.8
Periaqueductal gray
nTPM: 23.6
Samples: 3

Max nTPM: 27.2
Min nTPM: 20.1
Sample B Female 23.5
Sample C Male 27.2
Sample D Male 20.1
Superior colliculi
nTPM: 21.3
Samples: 4

Max nTPM: 28.1
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 28.1
Sample C Male 25.1
Sample D Male 24.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 29.7
Min nTPM: 25.3
Sample A Male 26.6
Sample B Male 29.7
Sample C Female 26.8
Sample D Female 25.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
71489799 Antisense, RP_050614_03_F03, Mouse strain C57BL/6J (56 days, male) 1.3

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