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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
9.7
nTPM
HPA Brain:
15.7
nTPM
GTEx:
9.7
nTPM
FANTOM5:
35.0
Scaled Tags Per Million
Pig:
6.2
nTPM
Mouse:
1.8
nTPM
Allen mouse:
0.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
15.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 13.9
2219
Male, age 76, both hemispheres
16.5
2586
Male, age 75, left hemisphere
15.6
2828
Female, age 72, unknown
15.3
2411
Female, age 72, unknown
14.2
1830
Male, age 51, unknown
13.9
1833
Male, age 53, unknown
13.5
2019
Male, age 18, unknown
13.5
1870
Female, age 42, unknown
13.2
2666
Male, age 74, left hemisphere
12.0
1827
Male, age 72, unknown
11.5
Dorsal raphe nucleus nTPM: 13.2
2750
Male, age 76, both hemispheres
16.9
2047
Male, age 72, unknown
13.0
2298
Female, age 72, unknown
12.3
1828
Male, age 53, unknown
12.0
2016
Female, age 72, unknown
11.9
Inferior colliculus nTPM: 11.5
1890
Male, age 53, unknown
13.9
2849
Male, age 72, unknown
11.4
2097
Female, age 72, unknown
10.7
1848
Female, age 42, unknown
10.1
Median raphe nucleus nTPM: 15.7
2220
Male, age 76, midline
15.7
Periaquaductal grey, anterior nTPM: 13.6
2502
Female, age 75, unknown
15.8
1795
Male, age 51, unknown
13.5
1947
Male, age 18, unknown
11.5
Periaquaductal grey, dorsal nTPM: 12.5
2850
Male, age 76, both hemispheres
14.3
2464
Female, age 72, unknown
13.8
1840
Male, age 53, unknown
12.0
1831
Male, age 72, unknown
9.8
Periaquaductal grey, lateral nTPM: 13.4
2140
Male, age 76, both hemispheres
17.2
2053
Male, age 18, unknown
11.7
2272
Male, age 74, both hemispheres
11.3
Pretectal area nTPM: 12.3
2667
Female, age 75, unknown
15.4
1817
Female, age 42, unknown
14.4
2316
Male, age 76, right hemisphere
13.8
2007
Male, age 72, unknown
13.4
2224
Female, age 72, unknown
13.3
1815
Male, age 53, unknown
11.9
1944
Female, age 72, unknown
11.5
2825
Male, age 18, unknown
11.5
2407
Male, age 75, both hemispheres
10.5
1816
Male, age 51, unknown
9.8
2273
Male, age 74, both hemispheres
9.4
Red nucleus nTPM: 15.4
2588
Male, age 74, left hemisphere
20.5
2769
Male, age 72, unknown
18.0
2227
Male, age 72, unknown
17.3
1904
Male, age 53, unknown
16.7
2823
Male, age 76, right hemisphere
16.1
2584
Male, age 75, left hemisphere
15.9
1865
Male, age 51, unknown
15.1
2785
Male, age 18, unknown
14.7
1821
Female, age 72, unknown
14.0
2503
Female, age 72, unknown
13.9
1954
Female, age 42, unknown
12.4
2725
Female, age 75, unknown
10.6
Substantia nigra nTPM: 14.3
2699
Male, age 18, unknown
24.3
2665
Male, age 74, both hemispheres
20.1
1851
Male, age 51, unknown
15.9
2409
Female, age 72, unknown
14.0
2241
Male, age 72, unknown
13.3
1889
Female, age 72, unknown
12.1
2583
Male, age 75, right hemisphere
11.7
1916
Female, age 42, unknown
10.6
2590
Female, age 75, unknown
10.5
1941
Male, age 53, unknown
10.2
Superior colliculus nTPM: 12.2
2668
Female, age 75, unknown
15.3
1913
Female, age 42, unknown
13.7
2087
Female, age 72, unknown
13.0
1995
Male, age 72, unknown
12.9
1839
Male, age 51, unknown
12.3
2587
Male, age 74, left hemisphere
12.0
1796
Male, age 53, unknown
11.8
1895
Male, age 76, right hemisphere
10.8
2664
Male, age 75, both hemispheres
10.4
2261
Male, age 18, unknown
10.0
Ventral tegmental area nTPM: 13.9
2021
Male, age 53, unknown
16.5
2223
Female, age 72, unknown
16.2
1942
Male, age 51, unknown
14.7
2410
Female, age 72, unknown
12.1
1915
Female, age 42, unknown
12.0
2218
Male, age 76, both hemispheres
11.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
9.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 9.7
Samples: 139
Max nTPM: 25.6
Min nTPM: 1.4
Std nTPM: 4.1
Median nTPM: 9.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
25.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
22.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
21.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
18.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
18.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
18.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
18.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
16.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
16.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
15.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
15.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
15.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
15.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
15.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
15.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
15.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
14.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
14.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
14.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
14.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
13.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
13.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
13.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
13.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
13.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
13.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
12.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
12.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
12.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
12.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
12.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
12.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
12.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
12.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
12.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
12.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
12.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
11.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
11.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
11.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
11.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
11.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
11.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
11.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
10.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
10.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
10.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
10.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
10.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
10.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
10.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
10.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
10.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
10.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
10.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
10.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
10.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
9.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
9.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
9.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
9.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
9.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
9.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
9.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
9.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
9.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
9.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
9.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
9.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
9.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
9.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
9.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
9.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
9.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
9.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
8.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
8.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
8.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
8.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
8.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
8.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
8.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
8.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
8.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
8.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
8.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
8.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
8.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
8.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
8.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
7.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
7.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
7.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
7.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
7.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
7.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
7.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
7.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
7.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
7.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
7.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
7.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
6.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
6.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
6.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
6.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
6.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
6.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
6.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
6.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
6.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
6.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
6.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
6.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
6.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
6.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
5.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
5.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
5.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
5.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
5.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
5.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
5.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
5.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
5.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
5.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
5.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
4.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
4.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
4.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
3.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
3.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
3.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
3.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
3.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
3.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
3.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
2.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 1.8
Samples: 4
Max nTPM: 2.1
Min nTPM: 1.5
Sample A
Male
1.5
Sample B
Male
1.6
Sample C
Female
2.1
Sample D
Female
1.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.