MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.6 nTPM
HPA Brain:82.3 nTPM
GTEx:38.6 nTPM
FANTOM5:62.3 Scaled Tags Per Million
Pig:63.6 nTPM
Mouse:221.5 nTPM
Allen mouse:11.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.8
2666 Male, age 74, left hemisphere 94.1
2019 Male, age 18, unknown 92.0
2586 Male, age 75, left hemisphere 84.4
1827 Male, age 72, unknown 75.3
2219 Male, age 76, both hemispheres 70.3
2828 Female, age 72, unknown 62.0
1870 Female, age 42, unknown 61.4
1830 Male, age 51, unknown 57.9
1833 Male, age 53, unknown 55.9
2411 Female, age 72, unknown 54.9
Dorsal raphe nucleus
nTPM: 66.8
1828 Male, age 53, unknown 79.6
2047 Male, age 72, unknown 69.7
2298 Female, age 72, unknown 69.6
2016 Female, age 72, unknown 60.3
2750 Male, age 76, both hemispheres 54.9
Inferior colliculus
nTPM: 71.4
1890 Male, age 53, unknown 78.0
2097 Female, age 72, unknown 74.1
2849 Male, age 72, unknown 68.5
1848 Female, age 42, unknown 65.0
Median raphe nucleus
nTPM: 72.4
2220 Male, age 76, midline 72.4
Periaquaductal grey, anterior
nTPM: 72.4
1947 Male, age 18, unknown 82.5
1795 Male, age 51, unknown 68.8
2502 Female, age 75, unknown 66.0
Periaquaductal grey, dorsal
nTPM: 61.8
1831 Male, age 72, unknown 69.0
2850 Male, age 76, both hemispheres 68.3
1840 Male, age 53, unknown 56.8
2464 Female, age 72, unknown 53.3
Periaquaductal grey, lateral
nTPM: 60.2
2140 Male, age 76, both hemispheres 65.5
2272 Male, age 74, both hemispheres 61.5
2053 Male, age 18, unknown 53.5
Pretectal area
nTPM: 82.3
1817 Female, age 42, unknown 114.3
2007 Male, age 72, unknown 110.6
1816 Male, age 51, unknown 110.0
1944 Female, age 72, unknown 98.3
1815 Male, age 53, unknown 89.8
2667 Female, age 75, unknown 74.7
2407 Male, age 75, both hemispheres 71.2
2224 Female, age 72, unknown 63.5
2273 Male, age 74, both hemispheres 60.2
2825 Male, age 18, unknown 58.9
2316 Male, age 76, right hemisphere 53.7
Red nucleus
nTPM: 69.0
2785 Male, age 18, unknown 86.1
1821 Female, age 72, unknown 79.1
2584 Male, age 75, left hemisphere 77.8
2588 Male, age 74, left hemisphere 75.6
2725 Female, age 75, unknown 71.4
1865 Male, age 51, unknown 69.6
1954 Female, age 42, unknown 67.9
2769 Male, age 72, unknown 61.8
1904 Male, age 53, unknown 60.0
2823 Male, age 76, right hemisphere 59.7
2227 Male, age 72, unknown 59.6
2503 Female, age 72, unknown 59.0
Substantia nigra
nTPM: 81.9
1941 Male, age 53, unknown 109.0
1889 Female, age 72, unknown 94.8
1916 Female, age 42, unknown 92.7
2665 Male, age 74, both hemispheres 91.2
1851 Male, age 51, unknown 77.6
2241 Male, age 72, unknown 74.8
2583 Male, age 75, right hemisphere 74.5
2409 Female, age 72, unknown 69.7
2590 Female, age 75, unknown 69.6
2699 Male, age 18, unknown 65.0
Superior colliculus
nTPM: 70.7
2668 Female, age 75, unknown 90.5
2664 Male, age 75, both hemispheres 84.1
2087 Female, age 72, unknown 79.3
1895 Male, age 76, right hemisphere 70.1
2587 Male, age 74, left hemisphere 69.8
2261 Male, age 18, unknown 69.0
1796 Male, age 53, unknown 65.6
1839 Male, age 51, unknown 62.4
1913 Female, age 42, unknown 60.4
1995 Male, age 72, unknown 56.1
Ventral tegmental area
nTPM: 64.4
2218 Male, age 76, both hemispheres 69.7
2410 Female, age 72, unknown 69.4
1915 Female, age 42, unknown 68.9
1942 Male, age 51, unknown 66.7
2223 Female, age 72, unknown 59.7
2021 Male, age 53, unknown 52.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.6
Samples: 139

Max nTPM: 69.1
Min nTPM: 18.9
Std nTPM: 8.6
Median nTPM: 39.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 69.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 58.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 57.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 56.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 55.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 55.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 54.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 53.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 51.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 50.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.3
FF:10158-103A5 76 years, female 62.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.4
Samples: 4

Max nTPM: 65.7
Min nTPM: 40.9
Sample A Female 64.2
Sample B Female 42.6
Sample C Male 65.7
Sample D Male 40.9
Midbrain
nTPM: 56.1
Samples: 4

Max nTPM: 74.4
Min nTPM: 38.6
Sample A Female 38.6
Sample B Female 44.9
Sample C Male 74.4
Sample D Male 66.6
Periaqueductal gray
nTPM: 45.0
Samples: 3

Max nTPM: 53.7
Min nTPM: 40.1
Sample B Female 40.1
Sample C Male 53.7
Sample D Male 41.3
Superior colliculi
nTPM: 63.6
Samples: 4

Max nTPM: 82.9
Min nTPM: 36.4
Sample A Female 67.4
Sample B Female 36.4
Sample C Male 82.9
Sample D Male 67.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 221.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 221.5
Samples: 4

Max nTPM: 228.2
Min nTPM: 209.0
Sample A Male 209.0
Sample B Male 227.4
Sample C Female 221.4
Sample D Female 228.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.5
68844295 Antisense, RP_050222_01_C09, Mouse strain C57BL/6J (56 days, male) 11.5

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