MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA Brain:58.3 nTPM
GTEx:37.1 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:108.9 nTPM
Mouse:38.6 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.7
2586 Male, age 75, left hemisphere 75.0
2666 Male, age 74, left hemisphere 63.5
2828 Female, age 72, unknown 59.8
1827 Male, age 72, unknown 58.8
1833 Male, age 53, unknown 53.5
1830 Male, age 51, unknown 51.2
2019 Male, age 18, unknown 50.6
2219 Male, age 76, both hemispheres 49.2
2411 Female, age 72, unknown 48.2
1870 Female, age 42, unknown 47.5
Dorsal raphe nucleus
nTPM: 49.4
1828 Male, age 53, unknown 56.4
2750 Male, age 76, both hemispheres 49.1
2047 Male, age 72, unknown 48.1
2016 Female, age 72, unknown 48.0
2298 Female, age 72, unknown 45.5
Inferior colliculus
nTPM: 53.5
2849 Male, age 72, unknown 61.8
1848 Female, age 42, unknown 54.3
1890 Male, age 53, unknown 49.9
2097 Female, age 72, unknown 48.1
Median raphe nucleus
nTPM: 49.9
2220 Male, age 76, midline 49.9
Periaquaductal grey, anterior
nTPM: 58.3
1947 Male, age 18, unknown 61.8
2502 Female, age 75, unknown 59.1
1795 Male, age 51, unknown 54.1
Periaquaductal grey, dorsal
nTPM: 49.9
1831 Male, age 72, unknown 51.6
2850 Male, age 76, both hemispheres 51.6
2464 Female, age 72, unknown 49.5
1840 Male, age 53, unknown 47.0
Periaquaductal grey, lateral
nTPM: 45.5
2053 Male, age 18, unknown 47.9
2140 Male, age 76, both hemispheres 47.7
2272 Male, age 74, both hemispheres 40.9
Pretectal area
nTPM: 53.8
1816 Male, age 51, unknown 64.6
1817 Female, age 42, unknown 59.6
1815 Male, age 53, unknown 57.8
2007 Male, age 72, unknown 57.8
2407 Male, age 75, both hemispheres 57.0
1944 Female, age 72, unknown 55.4
2825 Male, age 18, unknown 55.0
2667 Female, age 75, unknown 53.4
2316 Male, age 76, right hemisphere 49.4
2224 Female, age 72, unknown 43.4
2273 Male, age 74, both hemispheres 38.7
Red nucleus
nTPM: 56.4
2584 Male, age 75, left hemisphere 68.9
2588 Male, age 74, left hemisphere 62.9
2823 Male, age 76, right hemisphere 57.9
2769 Male, age 72, unknown 57.7
1821 Female, age 72, unknown 57.6
2227 Male, age 72, unknown 55.8
1954 Female, age 42, unknown 54.2
2725 Female, age 75, unknown 54.1
1865 Male, age 51, unknown 52.1
2503 Female, age 72, unknown 52.1
1904 Male, age 53, unknown 51.8
2785 Male, age 18, unknown 51.6
Substantia nigra
nTPM: 56.2
2665 Male, age 74, both hemispheres 70.0
1941 Male, age 53, unknown 63.4
1916 Female, age 42, unknown 61.4
2583 Male, age 75, right hemisphere 56.7
1889 Female, age 72, unknown 55.8
2699 Male, age 18, unknown 55.1
1851 Male, age 51, unknown 53.7
2590 Female, age 75, unknown 53.7
2241 Male, age 72, unknown 47.8
2409 Female, age 72, unknown 43.9
Superior colliculus
nTPM: 55.2
2664 Male, age 75, both hemispheres 75.5
2668 Female, age 75, unknown 58.0
2261 Male, age 18, unknown 56.9
2087 Female, age 72, unknown 56.4
1839 Male, age 51, unknown 55.9
1895 Male, age 76, right hemisphere 54.2
1796 Male, age 53, unknown 53.5
2587 Male, age 74, left hemisphere 49.2
1913 Female, age 42, unknown 46.3
1995 Male, age 72, unknown 46.2
Ventral tegmental area
nTPM: 49.9
1942 Male, age 51, unknown 52.3
2218 Male, age 76, both hemispheres 51.9
1915 Female, age 42, unknown 51.1
2410 Female, age 72, unknown 50.4
2223 Female, age 72, unknown 48.1
2021 Male, age 53, unknown 45.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.1
Samples: 139

Max nTPM: 59.0
Min nTPM: 24.8
Std nTPM: 5.4
Median nTPM: 36.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 59.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 56.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 53.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 49.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 48.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 47.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 46.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 45.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 45.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 45.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 44.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.8
FF:10158-103A5 76 years, female 57.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 108.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 99.1
Samples: 4

Max nTPM: 115.0
Min nTPM: 79.6
Sample A Female 112.4
Sample B Female 89.5
Sample C Male 115.0
Sample D Male 79.6
Midbrain
nTPM: 100.3
Samples: 4

Max nTPM: 122.7
Min nTPM: 84.6
Sample A Female 86.6
Sample B Female 84.6
Sample C Male 122.7
Sample D Male 107.4
Periaqueductal gray
nTPM: 90.9
Samples: 3

Max nTPM: 101.3
Min nTPM: 80.7
Sample B Female 80.7
Sample C Male 101.3
Sample D Male 90.8
Superior colliculi
nTPM: 108.9
Samples: 4

Max nTPM: 126.6
Min nTPM: 84.7
Sample A Female 118.7
Sample B Female 84.7
Sample C Male 105.6
Sample D Male 126.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.6
Samples: 4

Max nTPM: 40.6
Min nTPM: 37.2
Sample A Male 38.5
Sample B Male 40.6
Sample C Female 38.0
Sample D Female 37.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
70303034 Antisense, RP_050609_01_D12, Mouse strain C57BL/6J (56 days, male) 3.9

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