MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.0 nTPM
HPA Brain:52.5 nTPM
GTEx:21.0 nTPM
FANTOM5:78.9 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:36.4 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.4
2411 Female, age 72, unknown 54.3
2019 Male, age 18, unknown 52.4
1870 Female, age 42, unknown 51.8
1833 Male, age 53, unknown 50.4
2219 Male, age 76, both hemispheres 50.3
1830 Male, age 51, unknown 49.7
2666 Male, age 74, left hemisphere 48.9
1827 Male, age 72, unknown 48.5
2828 Female, age 72, unknown 44.5
2586 Male, age 75, left hemisphere 43.5
Dorsal raphe nucleus
nTPM: 47.2
2750 Male, age 76, both hemispheres 52.5
2016 Female, age 72, unknown 48.0
2047 Male, age 72, unknown 46.9
1828 Male, age 53, unknown 45.1
2298 Female, age 72, unknown 43.5
Inferior colliculus
nTPM: 52.5
2097 Female, age 72, unknown 54.9
1890 Male, age 53, unknown 54.8
1848 Female, age 42, unknown 50.7
2849 Male, age 72, unknown 49.6
Median raphe nucleus
nTPM: 52.2
2220 Male, age 76, midline 52.2
Periaquaductal grey, anterior
nTPM: 49.5
1947 Male, age 18, unknown 53.1
2502 Female, age 75, unknown 52.6
1795 Male, age 51, unknown 42.9
Periaquaductal grey, dorsal
nTPM: 47.2
2464 Female, age 72, unknown 49.4
1840 Male, age 53, unknown 46.7
1831 Male, age 72, unknown 46.3
2850 Male, age 76, both hemispheres 46.3
Periaquaductal grey, lateral
nTPM: 43.5
2053 Male, age 18, unknown 44.9
2140 Male, age 76, both hemispheres 44.6
2272 Male, age 74, both hemispheres 41.0
Pretectal area
nTPM: 47.9
2007 Male, age 72, unknown 56.7
1817 Female, age 42, unknown 53.6
1815 Male, age 53, unknown 52.0
1816 Male, age 51, unknown 51.3
1944 Female, age 72, unknown 49.8
2224 Female, age 72, unknown 46.1
2825 Male, age 18, unknown 45.9
2316 Male, age 76, right hemisphere 44.2
2407 Male, age 75, both hemispheres 42.5
2667 Female, age 75, unknown 42.5
2273 Male, age 74, both hemispheres 42.2
Red nucleus
nTPM: 49.0
2588 Male, age 74, left hemisphere 57.8
2503 Female, age 72, unknown 52.8
1821 Female, age 72, unknown 51.4
2785 Male, age 18, unknown 50.6
1865 Male, age 51, unknown 50.0
1954 Female, age 42, unknown 47.6
2584 Male, age 75, left hemisphere 47.4
1904 Male, age 53, unknown 47.2
2725 Female, age 75, unknown 46.7
2227 Male, age 72, unknown 45.9
2769 Male, age 72, unknown 45.7
2823 Male, age 76, right hemisphere 45.4
Substantia nigra
nTPM: 51.5
2241 Male, age 72, unknown 56.3
2409 Female, age 72, unknown 55.7
1941 Male, age 53, unknown 54.0
1889 Female, age 72, unknown 52.9
1851 Male, age 51, unknown 52.5
2590 Female, age 75, unknown 51.8
1916 Female, age 42, unknown 50.3
2665 Male, age 74, both hemispheres 50.0
2583 Male, age 75, right hemisphere 48.3
2699 Male, age 18, unknown 43.5
Superior colliculus
nTPM: 48.5
2587 Male, age 74, left hemisphere 55.0
2668 Female, age 75, unknown 52.7
1913 Female, age 42, unknown 51.8
1895 Male, age 76, right hemisphere 49.8
1839 Male, age 51, unknown 49.5
2261 Male, age 18, unknown 48.6
2087 Female, age 72, unknown 48.3
1995 Male, age 72, unknown 46.5
1796 Male, age 53, unknown 44.1
2664 Male, age 75, both hemispheres 38.9
Ventral tegmental area
nTPM: 48.5
2410 Female, age 72, unknown 54.1
2218 Male, age 76, both hemispheres 48.7
1942 Male, age 51, unknown 48.0
2021 Male, age 53, unknown 47.5
1915 Female, age 42, unknown 46.7
2223 Female, age 72, unknown 46.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.0
Samples: 139

Max nTPM: 40.6
Min nTPM: 11.7
Std nTPM: 4.5
Median nTPM: 20.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 40.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 35.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 32.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 31.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 30.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 30.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 30.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 29.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.9
FF:10158-103A5 76 years, female 78.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.1
Samples: 4

Max nTPM: 39.2
Min nTPM: 26.1
Sample A Female 39.2
Sample B Female 31.7
Sample C Male 35.4
Sample D Male 26.1
Midbrain
nTPM: 38.5
Samples: 4

Max nTPM: 47.2
Min nTPM: 29.7
Sample A Female 29.7
Sample B Female 37.0
Sample C Male 47.2
Sample D Male 40.2
Periaqueductal gray
nTPM: 32.2
Samples: 3

Max nTPM: 33.3
Min nTPM: 30.6
Sample B Female 33.3
Sample C Male 32.8
Sample D Male 30.6
Superior colliculi
nTPM: 39.7
Samples: 4

Max nTPM: 47.4
Min nTPM: 34.7
Sample A Female 37.6
Sample B Female 34.7
Sample C Male 47.4
Sample D Male 39.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.4
Samples: 4

Max nTPM: 38.1
Min nTPM: 31.9
Sample A Male 31.9
Sample B Male 37.8
Sample C Female 38.1
Sample D Female 37.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
73496917 Antisense, RP_051019_04_A08, Mouse strain C57BL/6J (56 days, male) 0.7

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