MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.0 nTPM
HPA Brain:36.0 nTPM
GTEx:5.0 nTPM
FANTOM5:5.4 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.5
2828 Female, age 72, unknown 32.6
1830 Male, age 51, unknown 32.5
2019 Male, age 18, unknown 30.3
1870 Female, age 42, unknown 28.9
2219 Male, age 76, both hemispheres 28.5
1833 Male, age 53, unknown 27.5
2411 Female, age 72, unknown 25.4
1827 Male, age 72, unknown 24.0
2586 Male, age 75, left hemisphere 23.7
2666 Male, age 74, left hemisphere 21.8
Dorsal raphe nucleus
nTPM: 28.1
2016 Female, age 72, unknown 37.8
2750 Male, age 76, both hemispheres 36.4
1828 Male, age 53, unknown 25.7
2047 Male, age 72, unknown 22.2
2298 Female, age 72, unknown 18.7
Inferior colliculus
nTPM: 24.9
1890 Male, age 53, unknown 27.6
2849 Male, age 72, unknown 26.0
1848 Female, age 42, unknown 24.2
2097 Female, age 72, unknown 21.7
Median raphe nucleus
nTPM: 23.0
2220 Male, age 76, midline 23.0
Periaquaductal grey, anterior
nTPM: 30.0
2502 Female, age 75, unknown 35.1
1795 Male, age 51, unknown 31.1
1947 Male, age 18, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 24.1
2464 Female, age 72, unknown 27.6
2850 Male, age 76, both hemispheres 25.3
1840 Male, age 53, unknown 22.6
1831 Male, age 72, unknown 21.0
Periaquaductal grey, lateral
nTPM: 36.0
2272 Male, age 74, both hemispheres 45.7
2140 Male, age 76, both hemispheres 37.2
2053 Male, age 18, unknown 25.0
Pretectal area
nTPM: 29.1
2273 Male, age 74, both hemispheres 41.0
2316 Male, age 76, right hemisphere 38.7
2825 Male, age 18, unknown 30.9
2407 Male, age 75, both hemispheres 29.5
2224 Female, age 72, unknown 28.4
2667 Female, age 75, unknown 28.2
2007 Male, age 72, unknown 27.1
1817 Female, age 42, unknown 25.5
1815 Male, age 53, unknown 24.9
1944 Female, age 72, unknown 24.2
1816 Male, age 51, unknown 21.3
Red nucleus
nTPM: 33.7
1904 Male, age 53, unknown 40.8
2227 Male, age 72, unknown 40.1
2785 Male, age 18, unknown 40.1
2503 Female, age 72, unknown 39.9
2769 Male, age 72, unknown 36.8
2823 Male, age 76, right hemisphere 34.8
2588 Male, age 74, left hemisphere 32.7
1954 Female, age 42, unknown 30.0
1865 Male, age 51, unknown 29.7
2725 Female, age 75, unknown 29.1
2584 Male, age 75, left hemisphere 25.8
1821 Female, age 72, unknown 25.0
Substantia nigra
nTPM: 24.7
2409 Female, age 72, unknown 28.9
2590 Female, age 75, unknown 27.5
1851 Male, age 51, unknown 27.1
2699 Male, age 18, unknown 26.8
2583 Male, age 75, right hemisphere 25.5
2241 Male, age 72, unknown 24.6
1941 Male, age 53, unknown 23.0
1889 Female, age 72, unknown 22.4
2665 Male, age 74, both hemispheres 20.8
1916 Female, age 42, unknown 20.1
Superior colliculus
nTPM: 27.7
1913 Female, age 42, unknown 35.5
1995 Male, age 72, unknown 32.4
1895 Male, age 76, right hemisphere 31.6
2261 Male, age 18, unknown 30.2
1839 Male, age 51, unknown 28.2
2664 Male, age 75, both hemispheres 26.6
2587 Male, age 74, left hemisphere 24.5
2668 Female, age 75, unknown 23.8
1796 Male, age 53, unknown 23.4
2087 Female, age 72, unknown 21.0
Ventral tegmental area
nTPM: 27.2
2021 Male, age 53, unknown 31.6
1942 Male, age 51, unknown 28.5
2410 Female, age 72, unknown 26.7
2218 Male, age 76, both hemispheres 26.2
2223 Female, age 72, unknown 25.8
1915 Female, age 42, unknown 24.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.0
Samples: 139

Max nTPM: 13.5
Min nTPM: 0.9
Std nTPM: 2.4
Median nTPM: 4.7
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 13.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 12.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 10.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 9.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 9.2
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 9.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 8.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 8.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 8.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 8.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.4
FF:10158-103A5 76 years, female 5.4

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