HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:82.8 nTPM
HPA Brain:29.0 nTPM
GTEx:82.8 nTPM
FANTOM5:27.7 Scaled Tags Per Million
Pig:38.7 nTPM
Mouse:147.4 nTPM
Allen mouse:8.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049830Antibody CAB002015Antibody CAB080330Antibody CAB080331Antibody CAB080332
Glial cells Not detectedHighNot detectedLowNot detected
Neuronal cells Not detectedHighNot detectedHighLow










HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Hippocampus
nTPM: 29.0
1898 Male, age 80, left hemisphere 44.2
2148 Female, age 91, left hemisphere 35.0
2621 Female, age 67, right hemisphere 28.2
1911 Female, age 85, right hemisphere 24.3
2529 Female, age 94, left hemisphere 22.6
1855 Male, age 76, left hemisphere 19.8
Dentate gyrus
nTPM: 25.7
1927 Female, age 91, both hemispheres 35.2
2010 Male, age 76, both hemispheres 35.0
2530 Female, age 94, left hemisphere 29.6
2528 Male, age 74, both hemispheres 19.8
2531 Female, age 67, both hemispheres 18.3
2246 Female, age 85, both hemispheres 16.7
Entorhinal gyrus
nTPM: 26.3
2764 Male, age 80, right hemisphere 38.8
2686 Male, age 75, right hemisphere 28.7
2613 Female, age 94, left hemisphere 26.7
2117 Female, age 91, right hemisphere 24.4
1938 Female, age 85, left hemisphere 22.9
1787 Male, age 76, left hemisphere 16.4
Hippocampus, CA1
nTPM: 25.0
2749 Male, age 80, left hemisphere 34.6
1873 Female, age 85, both hemispheres 31.7
2045 Male, age 76, both hemispheres 24.8
2527 Male, age 74, both hemispheres 19.3
2082 Female, age 91, right hemisphere 14.5
Hippocampus, CA2
nTPM: 26.0
1892 Male, age 76, both hemispheres 32.6
1963 Male, age 80, left hemisphere 29.6
1940 Female, age 85, left hemisphere 26.4
2437 Female, age 94, left hemisphere 25.3
2249 Male, age 74, both hemispheres 24.4
2113 Female, age 91, right hemisphere 17.8
Hippocampus, CA3
nTPM: 24.1
1867 Male, age 76, both hemispheres 33.2
1891 Female, age 85, both hemispheres 25.2
2137 Male, age 80, left hemisphere 24.1
2620 Female, age 94, left hemisphere 24.0
2861 Female, age 67, both hemispheres 23.0
2436 Male, age 74, both hemispheres 15.2
Parahippocampal cortex
nTPM: 23.7
1990 Female, age 91, right hemisphere 30.9
2622 Female, age 67, right hemisphere 28.3
2245 Female, age 91, both hemispheres 28.1
2018 Male, age 76, both hemispheres 23.9
1850 Male, age 80, both hemispheres 23.4
1933 Female, age 85, both hemispheres 22.8
2532 Female, age 72, left hemisphere 22.3
2692 Male, age 74, both hemispheres 21.0
2693 Female, age 94, both hemispheres 18.6
2250 Female, age 67, right hemisphere 17.5
Perirhinal gyrus
nTPM: 20.3
1794 Male, age 80, right hemisphere 27.2
1841 Female, age 85, right hemisphere 21.1
2521 Female, age 94, right hemisphere 20.3
1847 Female, age 91, left hemisphere 18.8
2848 Male, age 76, right hemisphere 13.9
Subiculum
nTPM: 26.6
1901 Male, age 80, both hemispheres 33.5
2042 Male, age 76, both hemispheres 29.6
1977 Female, age 85, both hemispheres 28.4
2619 Male, age 74, both hemispheres 24.9
2729 Female, age 91, right hemisphere 21.7
2438 Female, age 94, left hemisphere 21.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 82.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 82.8
Samples: 197

Max nTPM: 176.2
Min nTPM: 30.1
Std nTPM: 25.0
Median nTPM: 79.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 176.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 161.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 161.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 148.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 145.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 140.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 138.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 136.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 134.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 129.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 125.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.7
FF:10153-102I9 76 years, female 29.5
FF:10169-103B7 60 years, female 25.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.7
Pig sample Sample description nTPM
Subiculum
nTPM: 32.3
Samples: 4

Max nTPM: 42.0
Min nTPM: 27.9
Sample A Female 42.0
Sample B Female 30.7
Sample C Male 28.5
Sample D Male 27.9
Dorsal hippocampus
nTPM: 38.7
Samples: 4

Max nTPM: 53.2
Min nTPM: 25.9
Sample A Female 53.2
Sample B Female 34.6
Sample C Male 41.2
Sample D Male 25.9
Entorhinal cortex
nTPM: 37.9
Samples: 4

Max nTPM: 40.6
Min nTPM: 35.5
Sample A Female 36.6
Sample B Female 40.6
Sample C Male 39.0
Sample D Male 35.5
Ventral hippocampus
nTPM: 34.4
Samples: 4

Max nTPM: 43.2
Min nTPM: 22.8
Sample A Female 34.4
Sample B Female 22.8
Sample C Male 43.2
Sample D Male 37.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 147.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 143.1
Samples: 4

Max nTPM: 157.4
Min nTPM: 130.0
Sample A Male 130.0
Sample B Male 138.9
Sample C Female 146.0
Sample D Female 157.4
Hippocampal formation
nTPM: 147.4
Samples: 4

Max nTPM: 155.4
Min nTPM: 133.0
Sample A Male 147.2
Sample B Male 133.0
Sample C Female 155.4
Sample D Female 154.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.9
67979018 Antisense, RP_040923_01_H09, Mouse strain C57BL/6J (56 days, male) 8.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org