MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.7 nTPM
HPA Brain:11.6 nTPM
GTEx:2.7 nTPM
FANTOM5:15.0 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:8.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.2
1827 Male, age 72, unknown 11.0
1870 Female, age 42, unknown 10.2
2411 Female, age 72, unknown 10.1
2219 Male, age 76, both hemispheres 9.9
1833 Male, age 53, unknown 9.7
1830 Male, age 51, unknown 9.2
2586 Male, age 75, left hemisphere 8.9
2828 Female, age 72, unknown 8.4
2019 Male, age 18, unknown 8.1
2666 Male, age 74, left hemisphere 7.0
Dorsal raphe nucleus
nTPM: 9.4
2298 Female, age 72, unknown 10.8
2750 Male, age 76, both hemispheres 9.4
2016 Female, age 72, unknown 9.1
2047 Male, age 72, unknown 8.9
1828 Male, age 53, unknown 8.8
Inferior colliculus
nTPM: 11.6
2097 Female, age 72, unknown 13.1
1848 Female, age 42, unknown 11.6
2849 Male, age 72, unknown 11.6
1890 Male, age 53, unknown 10.3
Median raphe nucleus
nTPM: 8.9
2220 Male, age 76, midline 8.9
Periaquaductal grey, anterior
nTPM: 10.6
1947 Male, age 18, unknown 11.3
2502 Female, age 75, unknown 10.8
1795 Male, age 51, unknown 9.6
Periaquaductal grey, dorsal
nTPM: 10.4
1840 Male, age 53, unknown 12.7
1831 Male, age 72, unknown 11.0
2464 Female, age 72, unknown 9.2
2850 Male, age 76, both hemispheres 8.8
Periaquaductal grey, lateral
nTPM: 9.1
2140 Male, age 76, both hemispheres 9.3
2053 Male, age 18, unknown 9.1
2272 Male, age 74, both hemispheres 9.0
Pretectal area
nTPM: 10.7
2407 Male, age 75, both hemispheres 13.5
2825 Male, age 18, unknown 11.6
2224 Female, age 72, unknown 11.3
2316 Male, age 76, right hemisphere 11.0
2007 Male, age 72, unknown 10.7
1816 Male, age 51, unknown 10.4
2667 Female, age 75, unknown 10.3
1815 Male, age 53, unknown 10.1
1817 Female, age 42, unknown 9.9
1944 Female, age 72, unknown 9.7
2273 Male, age 74, both hemispheres 8.9
Red nucleus
nTPM: 8.9
2503 Female, age 72, unknown 10.0
2823 Male, age 76, right hemisphere 9.9
1821 Female, age 72, unknown 9.6
2785 Male, age 18, unknown 9.4
1865 Male, age 51, unknown 9.2
2725 Female, age 75, unknown 9.0
2584 Male, age 75, left hemisphere 8.8
2227 Male, age 72, unknown 8.7
2588 Male, age 74, left hemisphere 8.4
2769 Male, age 72, unknown 8.4
1904 Male, age 53, unknown 8.0
1954 Female, age 42, unknown 7.5
Substantia nigra
nTPM: 8.0
2583 Male, age 75, right hemisphere 10.7
1889 Female, age 72, unknown 9.3
1941 Male, age 53, unknown 8.9
2590 Female, age 75, unknown 8.8
1851 Male, age 51, unknown 7.9
1916 Female, age 42, unknown 7.7
2241 Male, age 72, unknown 7.6
2409 Female, age 72, unknown 6.8
2699 Male, age 18, unknown 6.7
2665 Male, age 74, both hemispheres 5.9
Superior colliculus
nTPM: 9.1
1839 Male, age 51, unknown 10.5
1895 Male, age 76, right hemisphere 10.4
2261 Male, age 18, unknown 9.8
1796 Male, age 53, unknown 9.6
2087 Female, age 72, unknown 9.0
1913 Female, age 42, unknown 8.6
2664 Male, age 75, both hemispheres 8.6
1995 Male, age 72, unknown 8.4
2587 Male, age 74, left hemisphere 8.2
2668 Female, age 75, unknown 8.1
Ventral tegmental area
nTPM: 8.9
2410 Female, age 72, unknown 10.7
2218 Male, age 76, both hemispheres 9.4
1915 Female, age 42, unknown 8.6
1942 Male, age 51, unknown 8.4
2223 Female, age 72, unknown 8.3
2021 Male, age 53, unknown 7.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.7
Samples: 139

Max nTPM: 6.6
Min nTPM: 1.7
Std nTPM: 0.6
Median nTPM: 2.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 6.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 5.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 4.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 4.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 3.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 3.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 3.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 3.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 3.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 3.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 3.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.0
FF:10158-103A5 76 years, female 15.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.9
Samples: 4

Max nTPM: 10.9
Min nTPM: 8.0
Sample A Female 10.9
Sample B Female 8.0
Sample C Male 8.8
Sample D Male 8.0
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 11.6
Min nTPM: 10.3
Sample A Female 10.6
Sample B Female 10.3
Sample C Male 10.7
Sample D Male 11.6
Periaqueductal gray
nTPM: 9.8
Samples: 3

Max nTPM: 10.2
Min nTPM: 9.4
Sample B Female 9.4
Sample C Male 10.2
Sample D Male 9.8
Superior colliculi
nTPM: 10.8
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.7
Sample A Female 12.0
Sample B Female 8.7
Sample C Male 11.5
Sample D Male 11.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.0
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.9
Sample A Male 6.9
Sample B Male 7.6
Sample C Female 8.9
Sample D Female 8.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68148757 Antisense, RP_041116_02_C01, Mouse strain C57BL/6J (56 days, male) 0.1

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