HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:26.8 nTPM
HPA Brain:88.9 nTPM
GTEx:26.8 nTPM
FANTOM5:58.3 Scaled Tags Per Million
Pig:35.0 nTPM
Mouse:38.2 nTPM
Allen mouse:7.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038914
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 88.9
Sample id Sample description nTPM
Hippocampus
nTPM: 85.1
2621 Female, age 67, right hemisphere 103.1
1855 Male, age 76, left hemisphere 83.4
2529 Female, age 94, left hemisphere 83.4
2148 Female, age 91, left hemisphere 81.7
1911 Female, age 85, right hemisphere 80.6
1898 Male, age 80, left hemisphere 78.1
Dentate gyrus
nTPM: 76.8
2530 Female, age 94, left hemisphere 87.0
1927 Female, age 91, both hemispheres 81.0
2531 Female, age 67, both hemispheres 78.6
2246 Female, age 85, both hemispheres 77.5
2010 Male, age 76, both hemispheres 73.0
2528 Male, age 74, both hemispheres 63.7
Entorhinal gyrus
nTPM: 88.9
2613 Female, age 94, left hemisphere 115.1
2686 Male, age 75, right hemisphere 97.3
2764 Male, age 80, right hemisphere 86.5
1787 Male, age 76, left hemisphere 85.3
1938 Female, age 85, left hemisphere 81.2
2117 Female, age 91, right hemisphere 68.3
Hippocampus, CA1
nTPM: 88.7
2749 Male, age 80, left hemisphere 131.2
2527 Male, age 74, both hemispheres 85.0
2082 Female, age 91, right hemisphere 79.2
2045 Male, age 76, both hemispheres 74.6
1873 Female, age 85, both hemispheres 73.3
Hippocampus, CA2
nTPM: 80.0
1963 Male, age 80, left hemisphere 83.2
1892 Male, age 76, both hemispheres 83.0
2437 Female, age 94, left hemisphere 82.2
1940 Female, age 85, left hemisphere 80.8
2113 Female, age 91, right hemisphere 80.8
2249 Male, age 74, both hemispheres 69.7
Hippocampus, CA3
nTPM: 85.6
2137 Male, age 80, left hemisphere 118.2
2861 Female, age 67, both hemispheres 102.9
2620 Female, age 94, left hemisphere 83.2
1867 Male, age 76, both hemispheres 72.4
2436 Male, age 74, both hemispheres 68.6
1891 Female, age 85, both hemispheres 68.2
Parahippocampal cortex
nTPM: 86.8
2622 Female, age 67, right hemisphere 120.6
2245 Female, age 91, both hemispheres 94.0
2692 Male, age 74, both hemispheres 86.2
1933 Female, age 85, both hemispheres 85.5
2693 Female, age 94, both hemispheres 83.7
2018 Male, age 76, both hemispheres 83.5
1850 Male, age 80, both hemispheres 81.6
2532 Female, age 72, left hemisphere 80.6
1990 Female, age 91, right hemisphere 76.6
2250 Female, age 67, right hemisphere 75.5
Perirhinal gyrus
nTPM: 79.5
2848 Male, age 76, right hemisphere 83.9
1847 Female, age 91, left hemisphere 83.4
1841 Female, age 85, right hemisphere 80.4
1794 Male, age 80, right hemisphere 77.5
2521 Female, age 94, right hemisphere 72.3
Subiculum
nTPM: 77.3
2619 Male, age 74, both hemispheres 86.3
2042 Male, age 76, both hemispheres 82.4
1901 Male, age 80, both hemispheres 79.6
2438 Female, age 94, left hemisphere 73.8
1977 Female, age 85, both hemispheres 70.9
2729 Female, age 91, right hemisphere 70.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.8
Samples: 197

Max nTPM: 62.5
Min nTPM: 9.9
Std nTPM: 10.0
Median nTPM: 25.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 62.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 61.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 54.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 50.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 49.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 49.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 48.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 48.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 48.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 47.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 47.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 58.3
FF:10169-103B7 60 years, female 62.3
FF:10153-102I9 76 years, female 54.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.0
Pig sample Sample description nTPM
Subiculum
nTPM: 35.0
Samples: 4

Max nTPM: 47.0
Min nTPM: 27.7
Sample A Female 47.0
Sample B Female 29.0
Sample C Male 36.3
Sample D Male 27.7
Dorsal hippocampus
nTPM: 34.1
Samples: 4

Max nTPM: 44.0
Min nTPM: 21.5
Sample A Female 44.0
Sample B Female 38.2
Sample C Male 32.5
Sample D Male 21.5
Entorhinal cortex
nTPM: 34.1
Samples: 4

Max nTPM: 36.6
Min nTPM: 30.0
Sample A Female 36.2
Sample B Female 30.0
Sample C Male 36.6
Sample D Male 33.7
Ventral hippocampus
nTPM: 34.7
Samples: 4

Max nTPM: 50.2
Min nTPM: 22.5
Sample A Female 26.9
Sample B Female 22.5
Sample C Male 39.3
Sample D Male 50.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 38.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 38.2
Samples: 4

Max nTPM: 49.6
Min nTPM: 33.7
Sample A Male 34.5
Sample B Male 34.9
Sample C Female 33.7
Sample D Female 49.6
Hippocampal formation
nTPM: 32.4
Samples: 4

Max nTPM: 34.9
Min nTPM: 30.0
Sample A Male 30.0
Sample B Male 34.3
Sample C Female 34.9
Sample D Female 30.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.9
76098403 Antisense, RP_060626_01_H04, Mouse strain C57BL/6J (56 days, male) 7.9

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