MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.3 nTPM
HPA Brain:110.6 nTPM
GTEx:68.3 nTPM
FANTOM5:64.2 Scaled Tags Per Million
Pig:111.6 nTPM
Mouse:160.2 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.9
2666 Male, age 74, left hemisphere 97.2
2586 Male, age 75, left hemisphere 94.2
1827 Male, age 72, unknown 88.9
2411 Female, age 72, unknown 86.6
2019 Male, age 18, unknown 80.9
2219 Male, age 76, both hemispheres 80.9
2828 Female, age 72, unknown 76.9
1870 Female, age 42, unknown 76.5
1833 Male, age 53, unknown 74.0
1830 Male, age 51, unknown 62.6
Dorsal raphe nucleus
nTPM: 91.1
2298 Female, age 72, unknown 108.4
2047 Male, age 72, unknown 97.7
1828 Male, age 53, unknown 92.0
2750 Male, age 76, both hemispheres 84.8
2016 Female, age 72, unknown 72.3
Inferior colliculus
nTPM: 72.3
2097 Female, age 72, unknown 82.1
1890 Male, age 53, unknown 72.2
1848 Female, age 42, unknown 70.8
2849 Male, age 72, unknown 64.2
Median raphe nucleus
nTPM: 89.7
2220 Male, age 76, midline 89.7
Periaquaductal grey, anterior
nTPM: 84.8
1947 Male, age 18, unknown 90.6
1795 Male, age 51, unknown 83.5
2502 Female, age 75, unknown 80.4
Periaquaductal grey, dorsal
nTPM: 70.2
1840 Male, age 53, unknown 84.4
2464 Female, age 72, unknown 70.1
1831 Male, age 72, unknown 63.2
2850 Male, age 76, both hemispheres 63.1
Periaquaductal grey, lateral
nTPM: 60.6
2053 Male, age 18, unknown 64.4
2140 Male, age 76, both hemispheres 64.1
2272 Male, age 74, both hemispheres 53.4
Pretectal area
nTPM: 80.2
1816 Male, age 51, unknown 103.6
2007 Male, age 72, unknown 96.8
1817 Female, age 42, unknown 94.1
1944 Female, age 72, unknown 90.5
2667 Female, age 75, unknown 84.3
1815 Male, age 53, unknown 81.0
2825 Male, age 18, unknown 73.5
2224 Female, age 72, unknown 72.6
2316 Male, age 76, right hemisphere 64.6
2273 Male, age 74, both hemispheres 64.4
2407 Male, age 75, both hemispheres 56.9
Red nucleus
nTPM: 71.4
1821 Female, age 72, unknown 89.1
2725 Female, age 75, unknown 79.1
2588 Male, age 74, left hemisphere 77.3
2503 Female, age 72, unknown 73.4
2785 Male, age 18, unknown 72.1
1954 Female, age 42, unknown 71.1
2769 Male, age 72, unknown 70.6
2227 Male, age 72, unknown 67.0
2584 Male, age 75, left hemisphere 66.9
1865 Male, age 51, unknown 65.8
1904 Male, age 53, unknown 64.6
2823 Male, age 76, right hemisphere 60.0
Substantia nigra
nTPM: 110.6
1916 Female, age 42, unknown 163.5
1851 Male, age 51, unknown 135.2
2241 Male, age 72, unknown 127.2
2409 Female, age 72, unknown 114.9
2665 Male, age 74, both hemispheres 109.1
1941 Male, age 53, unknown 107.2
1889 Female, age 72, unknown 96.6
2699 Male, age 18, unknown 95.2
2583 Male, age 75, right hemisphere 80.7
2590 Female, age 75, unknown 76.2
Superior colliculus
nTPM: 74.0
2668 Female, age 75, unknown 92.0
1796 Male, age 53, unknown 84.1
2087 Female, age 72, unknown 81.1
2261 Male, age 18, unknown 77.6
1895 Male, age 76, right hemisphere 74.2
2664 Male, age 75, both hemispheres 73.4
2587 Male, age 74, left hemisphere 70.7
1839 Male, age 51, unknown 68.5
1913 Female, age 42, unknown 61.7
1995 Male, age 72, unknown 56.5
Ventral tegmental area
nTPM: 92.9
1915 Female, age 42, unknown 116.7
2410 Female, age 72, unknown 111.3
2218 Male, age 76, both hemispheres 96.3
1942 Male, age 51, unknown 84.4
2021 Male, age 53, unknown 76.4
2223 Female, age 72, unknown 72.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.3
Samples: 139

Max nTPM: 164.8
Min nTPM: 34.1
Std nTPM: 22.8
Median nTPM: 61.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 164.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 142.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 141.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 132.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 120.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 119.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 117.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 111.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 107.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 107.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 103.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.2
FF:10158-103A5 76 years, female 64.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 111.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 105.2
Samples: 4

Max nTPM: 136.4
Min nTPM: 81.5
Sample A Female 136.4
Sample B Female 82.8
Sample C Male 120.0
Sample D Male 81.5
Midbrain
nTPM: 108.9
Samples: 4

Max nTPM: 124.7
Min nTPM: 89.9
Sample A Female 122.9
Sample B Female 89.9
Sample C Male 124.7
Sample D Male 98.1
Periaqueductal gray
nTPM: 84.8
Samples: 3

Max nTPM: 100.2
Min nTPM: 70.1
Sample B Female 84.2
Sample C Male 100.2
Sample D Male 70.1
Superior colliculi
nTPM: 111.6
Samples: 4

Max nTPM: 128.8
Min nTPM: 91.4
Sample A Female 126.7
Sample B Female 91.4
Sample C Male 128.8
Sample D Male 99.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 160.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.2
Samples: 4

Max nTPM: 162.1
Min nTPM: 156.7
Sample A Male 156.7
Sample B Male 159.8
Sample C Female 162.1
Sample D Female 162.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
68157415 Antisense, RP_041116_02_F08, Mouse strain C57BL/6J (56 days, male) 7.0

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