MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA Brain:60.4 nTPM
GTEx:28.5 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:39.9 nTPM
Mouse:48.4 nTPM
Allen mouse:10.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.4
2586 Male, age 75, left hemisphere 92.0
2666 Male, age 74, left hemisphere 75.4
2828 Female, age 72, unknown 51.8
1827 Male, age 72, unknown 48.7
2219 Male, age 76, both hemispheres 43.8
1833 Male, age 53, unknown 35.0
2411 Female, age 72, unknown 33.3
2019 Male, age 18, unknown 32.4
1870 Female, age 42, unknown 32.0
1830 Male, age 51, unknown 29.3
Dorsal raphe nucleus
nTPM: 36.9
2298 Female, age 72, unknown 44.8
2047 Male, age 72, unknown 39.5
1828 Male, age 53, unknown 36.5
2750 Male, age 76, both hemispheres 33.0
2016 Female, age 72, unknown 30.5
Inferior colliculus
nTPM: 35.1
1848 Female, age 42, unknown 36.2
2849 Male, age 72, unknown 36.1
1890 Male, age 53, unknown 35.2
2097 Female, age 72, unknown 33.0
Median raphe nucleus
nTPM: 41.4
2220 Male, age 76, midline 41.4
Periaquaductal grey, anterior
nTPM: 60.4
1795 Male, age 51, unknown 72.5
2502 Female, age 75, unknown 60.6
1947 Male, age 18, unknown 47.9
Periaquaductal grey, dorsal
nTPM: 48.1
1831 Male, age 72, unknown 66.1
1840 Male, age 53, unknown 45.9
2850 Male, age 76, both hemispheres 40.4
2464 Female, age 72, unknown 40.0
Periaquaductal grey, lateral
nTPM: 41.5
2140 Male, age 76, both hemispheres 47.9
2053 Male, age 18, unknown 45.3
2272 Male, age 74, both hemispheres 31.3
Pretectal area
nTPM: 60.2
1816 Male, age 51, unknown 109.4
1944 Female, age 72, unknown 87.6
2007 Male, age 72, unknown 78.0
1815 Male, age 53, unknown 72.3
1817 Female, age 42, unknown 67.3
2224 Female, age 72, unknown 52.9
2667 Female, age 75, unknown 48.2
2825 Male, age 18, unknown 48.0
2316 Male, age 76, right hemisphere 36.5
2407 Male, age 75, both hemispheres 32.5
2273 Male, age 74, both hemispheres 28.8
Red nucleus
nTPM: 32.0
2725 Female, age 75, unknown 43.7
2588 Male, age 74, left hemisphere 41.7
2584 Male, age 75, left hemisphere 41.6
2785 Male, age 18, unknown 40.4
2823 Male, age 76, right hemisphere 33.7
2503 Female, age 72, unknown 32.7
1954 Female, age 42, unknown 27.5
1904 Male, age 53, unknown 26.6
2227 Male, age 72, unknown 25.2
1821 Female, age 72, unknown 24.3
2769 Male, age 72, unknown 23.9
1865 Male, age 51, unknown 23.0
Substantia nigra
nTPM: 58.3
2665 Male, age 74, both hemispheres 85.7
1916 Female, age 42, unknown 81.8
1889 Female, age 72, unknown 62.1
1851 Male, age 51, unknown 61.4
1941 Male, age 53, unknown 57.2
2699 Male, age 18, unknown 54.8
2583 Male, age 75, right hemisphere 47.6
2409 Female, age 72, unknown 46.3
2241 Male, age 72, unknown 46.0
2590 Female, age 75, unknown 40.0
Superior colliculus
nTPM: 49.7
2087 Female, age 72, unknown 79.3
2261 Male, age 18, unknown 66.4
1796 Male, age 53, unknown 62.2
2664 Male, age 75, both hemispheres 57.7
2668 Female, age 75, unknown 54.3
1913 Female, age 42, unknown 40.9
1995 Male, age 72, unknown 38.4
1839 Male, age 51, unknown 34.6
1895 Male, age 76, right hemisphere 32.6
2587 Male, age 74, left hemisphere 30.8
Ventral tegmental area
nTPM: 49.0
1915 Female, age 42, unknown 56.5
2218 Male, age 76, both hemispheres 53.8
2410 Female, age 72, unknown 52.2
1942 Male, age 51, unknown 51.2
2021 Male, age 53, unknown 42.2
2223 Female, age 72, unknown 38.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.5
Samples: 139

Max nTPM: 71.1
Min nTPM: 3.8
Std nTPM: 14.6
Median nTPM: 26.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 71.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 64.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 62.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 60.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 57.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 56.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 55.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 55.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 52.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 52.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 52.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.9
Samples: 4

Max nTPM: 52.9
Min nTPM: 17.3
Sample A Female 45.9
Sample B Female 27.3
Sample C Male 52.9
Sample D Male 17.3
Midbrain
nTPM: 39.9
Samples: 4

Max nTPM: 61.0
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 32.1
Sample C Male 59.6
Sample D Male 61.0
Periaqueductal gray
nTPM: 27.6
Samples: 3

Max nTPM: 31.9
Min nTPM: 25.2
Sample B Female 25.6
Sample C Male 31.9
Sample D Male 25.2
Superior colliculi
nTPM: 35.5
Samples: 4

Max nTPM: 46.7
Min nTPM: 15.0
Sample A Female 42.3
Sample B Female 15.0
Sample C Male 46.7
Sample D Male 38.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.4
Samples: 4

Max nTPM: 50.4
Min nTPM: 45.3
Sample A Male 48.7
Sample B Male 45.3
Sample C Female 49.0
Sample D Female 50.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
68522466 Antisense, RP_050118_02_B03, Mouse strain C57BL/6J (56 days, male) 11.9
71836872 Antisense, RP_051017_02_E02, Mouse strain C57BL/6J (56 days, male) 9.1

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