HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.9 nTPM
HPA Brain:21.5 nTPM
GTEx:25.9 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Pig:8.9 nTPM
Mouse:18.3 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.5
Sample id Sample description nTPM
Hippocampus
nTPM: 20.6
2148 Female, age 91, left hemisphere 23.8
2529 Female, age 94, left hemisphere 23.5
2621 Female, age 67, right hemisphere 22.3
1911 Female, age 85, right hemisphere 20.1
1898 Male, age 80, left hemisphere 17.2
1855 Male, age 76, left hemisphere 16.7
Dentate gyrus
nTPM: 19.6
2531 Female, age 67, both hemispheres 23.7
2530 Female, age 94, left hemisphere 20.5
2528 Male, age 74, both hemispheres 19.2
2246 Female, age 85, both hemispheres 19.0
1927 Female, age 91, both hemispheres 17.5
2010 Male, age 76, both hemispheres 17.4
Entorhinal gyrus
nTPM: 19.9
2686 Male, age 75, right hemisphere 23.3
2613 Female, age 94, left hemisphere 23.1
2764 Male, age 80, right hemisphere 20.9
2117 Female, age 91, right hemisphere 17.9
1787 Male, age 76, left hemisphere 17.4
1938 Female, age 85, left hemisphere 17.0
Hippocampus, CA1
nTPM: 19.0
2082 Female, age 91, right hemisphere 22.3
1873 Female, age 85, both hemispheres 18.8
2749 Male, age 80, left hemisphere 18.6
2527 Male, age 74, both hemispheres 17.8
2045 Male, age 76, both hemispheres 17.7
Hippocampus, CA2
nTPM: 18.3
2113 Female, age 91, right hemisphere 20.1
2437 Female, age 94, left hemisphere 20.1
2249 Male, age 74, both hemispheres 18.2
1963 Male, age 80, left hemisphere 17.9
1940 Female, age 85, left hemisphere 17.6
1892 Male, age 76, both hemispheres 15.9
Hippocampus, CA3
nTPM: 21.5
2861 Female, age 67, both hemispheres 26.6
2620 Female, age 94, left hemisphere 25.0
2436 Male, age 74, both hemispheres 21.1
2137 Male, age 80, left hemisphere 19.5
1891 Female, age 85, both hemispheres 19.2
1867 Male, age 76, both hemispheres 17.4
Parahippocampal cortex
nTPM: 19.7
2692 Male, age 74, both hemispheres 23.9
2622 Female, age 67, right hemisphere 22.0
2693 Female, age 94, both hemispheres 21.1
2245 Female, age 91, both hemispheres 20.5
2532 Female, age 72, left hemisphere 20.2
1990 Female, age 91, right hemisphere 18.9
2250 Female, age 67, right hemisphere 18.7
1850 Male, age 80, both hemispheres 18.4
2018 Male, age 76, both hemispheres 17.3
1933 Female, age 85, both hemispheres 15.6
Perirhinal gyrus
nTPM: 16.7
2521 Female, age 94, right hemisphere 18.4
1794 Male, age 80, right hemisphere 16.7
1841 Female, age 85, right hemisphere 16.5
2848 Male, age 76, right hemisphere 16.1
1847 Female, age 91, left hemisphere 15.9
Subiculum
nTPM: 18.2
2619 Male, age 74, both hemispheres 23.6
2729 Female, age 91, right hemisphere 20.0
2042 Male, age 76, both hemispheres 18.3
1977 Female, age 85, both hemispheres 17.0
1901 Male, age 80, both hemispheres 16.8
2438 Female, age 94, left hemisphere 13.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.9
Samples: 197

Max nTPM: 80.6
Min nTPM: 8.1
Std nTPM: 8.6
Median nTPM: 24.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 80.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 59.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 50.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 47.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 45.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 44.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 44.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 43.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 41.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 41.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 40.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.5
FF:10153-102I9 76 years, female 24.4
FF:10169-103B7 60 years, female 16.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.9
Pig sample Sample description nTPM
Subiculum
nTPM: 8.9
Samples: 4

Max nTPM: 10.0
Min nTPM: 8.0
Sample A Female 10.0
Sample B Female 9.3
Sample C Male 8.0
Sample D Male 8.1
Dorsal hippocampus
nTPM: 8.9
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.6
Sample A Female 9.8
Sample B Female 8.6
Sample C Male 9.5
Sample D Male 7.6
Entorhinal cortex
nTPM: 8.3
Samples: 4

Max nTPM: 9.0
Min nTPM: 7.6
Sample A Female 8.5
Sample B Female 8.2
Sample C Male 9.0
Sample D Male 7.6
Ventral hippocampus
nTPM: 8.9
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.4
Sample A Female 8.7
Sample B Female 8.4
Sample C Male 9.8
Sample D Male 8.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 16.8
Samples: 4

Max nTPM: 17.4
Min nTPM: 15.3
Sample A Male 15.3
Sample B Male 17.2
Sample C Female 17.4
Sample D Female 17.1
Hippocampal formation
nTPM: 18.3
Samples: 4

Max nTPM: 20.3
Min nTPM: 17.3
Sample A Male 17.9
Sample B Male 17.8
Sample C Female 17.3
Sample D Female 20.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
71764195 Antisense, RP_050921_03_D06, Mouse strain C57BL/6J (56 days, male) 0.1

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