MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.5 nTPM
HPA Brain:26.7 nTPM
GTEx:38.5 nTPM
FANTOM5:44.1 Scaled Tags Per Million
Pig:14.2 nTPM
Mouse:22.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.0
2666 Male, age 74, left hemisphere 24.0
2586 Male, age 75, left hemisphere 22.8
1827 Male, age 72, unknown 21.9
2219 Male, age 76, both hemispheres 21.7
2828 Female, age 72, unknown 19.1
2019 Male, age 18, unknown 19.0
2411 Female, age 72, unknown 19.0
1830 Male, age 51, unknown 18.2
1870 Female, age 42, unknown 17.8
1833 Male, age 53, unknown 17.0
Dorsal raphe nucleus
nTPM: 21.9
2750 Male, age 76, both hemispheres 24.6
2298 Female, age 72, unknown 22.2
2047 Male, age 72, unknown 21.6
1828 Male, age 53, unknown 20.8
2016 Female, age 72, unknown 20.4
Inferior colliculus
nTPM: 18.9
1890 Male, age 53, unknown 20.6
1848 Female, age 42, unknown 19.0
2849 Male, age 72, unknown 18.7
2097 Female, age 72, unknown 17.5
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Periaquaductal grey, anterior
nTPM: 20.3
2502 Female, age 75, unknown 22.0
1947 Male, age 18, unknown 20.4
1795 Male, age 51, unknown 18.4
Periaquaductal grey, dorsal
nTPM: 20.1
2464 Female, age 72, unknown 21.4
1831 Male, age 72, unknown 20.0
2850 Male, age 76, both hemispheres 19.9
1840 Male, age 53, unknown 19.1
Periaquaductal grey, lateral
nTPM: 19.3
2140 Male, age 76, both hemispheres 21.6
2272 Male, age 74, both hemispheres 19.0
2053 Male, age 18, unknown 17.3
Pretectal area
nTPM: 21.0
1816 Male, age 51, unknown 26.1
1815 Male, age 53, unknown 24.5
2007 Male, age 72, unknown 21.5
2407 Male, age 75, both hemispheres 21.3
2667 Female, age 75, unknown 21.2
1817 Female, age 42, unknown 20.9
2224 Female, age 72, unknown 20.6
2273 Male, age 74, both hemispheres 20.6
2825 Male, age 18, unknown 20.2
1944 Female, age 72, unknown 19.6
2316 Male, age 76, right hemisphere 14.1
Red nucleus
nTPM: 19.5
2785 Male, age 18, unknown 22.2
2769 Male, age 72, unknown 21.4
2503 Female, age 72, unknown 20.8
1821 Female, age 72, unknown 20.5
2823 Male, age 76, right hemisphere 20.4
2725 Female, age 75, unknown 20.3
1904 Male, age 53, unknown 19.4
1865 Male, age 51, unknown 18.8
2227 Male, age 72, unknown 18.8
2584 Male, age 75, left hemisphere 18.7
2588 Male, age 74, left hemisphere 16.5
1954 Female, age 42, unknown 16.2
Substantia nigra
nTPM: 21.8
1916 Female, age 42, unknown 27.9
2665 Male, age 74, both hemispheres 24.3
1941 Male, age 53, unknown 24.2
1851 Male, age 51, unknown 23.4
2699 Male, age 18, unknown 22.7
2583 Male, age 75, right hemisphere 21.6
2590 Female, age 75, unknown 21.1
2241 Male, age 72, unknown 20.8
1889 Female, age 72, unknown 16.7
2409 Female, age 72, unknown 15.0
Superior colliculus
nTPM: 20.8
2664 Male, age 75, both hemispheres 29.5
2087 Female, age 72, unknown 22.3
1913 Female, age 42, unknown 21.4
2587 Male, age 74, left hemisphere 21.1
2261 Male, age 18, unknown 20.2
1839 Male, age 51, unknown 19.9
1895 Male, age 76, right hemisphere 19.8
1995 Male, age 72, unknown 18.0
2668 Female, age 75, unknown 18.0
1796 Male, age 53, unknown 17.9
Ventral tegmental area
nTPM: 21.9
1915 Female, age 42, unknown 24.9
2218 Male, age 76, both hemispheres 24.5
2021 Male, age 53, unknown 22.3
2223 Female, age 72, unknown 21.8
1942 Male, age 51, unknown 20.3
2410 Female, age 72, unknown 17.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.5
Samples: 139

Max nTPM: 118.8
Min nTPM: 15.4
Std nTPM: 12.5
Median nTPM: 36.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 118.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 73.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 73.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 66.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 65.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 59.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 59.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 57.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 57.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 56.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 55.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.1
FF:10158-103A5 76 years, female 44.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.2
Samples: 4

Max nTPM: 16.4
Min nTPM: 12.9
Sample A Female 16.4
Sample B Female 14.3
Sample C Male 13.3
Sample D Male 12.9
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 15.8
Min nTPM: 10.2
Sample A Female 15.8
Sample B Female 13.1
Sample C Male 10.7
Sample D Male 10.2
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 13.5
Min nTPM: 11.0
Sample B Female 11.0
Sample C Male 13.5
Sample D Male 11.3
Superior colliculi
nTPM: 13.7
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.2
Sample A Female 14.6
Sample B Female 15.4
Sample C Male 12.6
Sample D Male 12.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 25.4
Min nTPM: 19.1
Sample A Male 25.4
Sample B Male 21.2
Sample C Female 19.1
Sample D Female 23.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71764195 Antisense, RP_050921_03_D06, Mouse strain C57BL/6J (56 days, male) 0.0

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