BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:29.7 nTPM
HPA Brain:43.3 nTPM
GTEx:29.7 nTPM
FANTOM5:94.5 Scaled Tags Per Million
Pig:47.3 nTPM
Mouse:16.5 nTPM
Allen mouse:1.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039743Antibody HPA040168
Glial cells Not detectedMedium
Neuronal cells MediumMedium




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.9
1854 Male, age 80, left hemisphere 46.9
1857 Female, age 85, left hemisphere 45.8
2290 Female, age 72, unknown 44.5
2846 Female, age 79, unknown 43.3
2288 Male, age 75, left hemisphere 41.2
2289 Male, age 61, right hemisphere 40.7
2481 Female, age 94, left hemisphere 40.7
1781 Male, age 74, unknown 40.5
Globus pallidus, externus
nTPM: 33.4
2567 Female, age 72, unknown 37.7
2395 Male, age 75, both hemispheres 36.5
2646 Male, age 61, right hemisphere 34.2
2772 Female, age 79, unknown 29.4
1996 Male, age 80, right hemisphere 29.3
Globus pallidus, internus
nTPM: 36.9
2566 Female, age 72, unknown 42.5
2111 Female, age 85, right hemisphere 40.7
2287 Male, age 75, right hemisphere 36.8
1818 Male, age 74, unknown 36.4
2037 Male, age 80, right hemisphere 35.9
2483 Female, age 94, right hemisphere 33.5
2778 Female, age 91, both hemispheres 32.6
Nucleus accumbens
nTPM: 42.3
2824 Male, age 61, right hemisphere 48.7
1806 Female, age 85, left hemisphere 46.3
1856 Female, age 91, right hemisphere 46.3
1783 Male, age 74, unknown 43.0
2286 Male, age 75, left hemisphere 40.5
2698 Female, age 72, unknown 39.4
2732 Male, age 80, right hemisphere 37.3
2391 Female, age 94, left hemisphere 36.5
Nucleus basalis of Meynert
nTPM: 36.7
2393 Male, age 80, right hemisphere 44.4
2821 Male, age 75, both hemispheres 37.6
2484 Female, age 94, left hemisphere 37.0
2569 Male, age 61, both hemispheres 27.7
Nucleus of the diagonal band
nTPM: 43.3
2029 Male, age 61, right hemisphere 45.3
1812 Female, age 91, both hemispheres 44.6
1979 Male, age 74, unknown 43.8
2775 Male, age 80, right hemisphere 41.3
2195 Female, age 85, both hemispheres 41.2
Putamen
nTPM: 40.7
1838 Male, age 80, right hemisphere 49.0
1937 Female, age 91, right hemisphere 45.5
2466 Female, age 79, unknown 42.9
1829 Male, age 74, unknown 42.7
2489 Female, age 72, unknown 37.0
2647 Male, age 75, left hemisphere 35.2
2482 Female, age 94, left hemisphere 33.0
Septal nuclei
nTPM: 42.4
2629 Female, age 94, right hemisphere 48.0
2031 Female, age 72, unknown 46.8
2009 Female, age 91, both hemispheres 46.0
2199 Male, age 80, right hemisphere 40.5
2394 Male, age 61, left hemisphere 40.3
2059 Female, age 85, both hemispheres 37.9
1960 Male, age 74, unknown 37.3
Stria terminalis, bed nucleus
nTPM: 41.3
2486 Female, age 94, both hemispheres 45.0
2201 Male, age 74, unknown 39.4
1974 Female, age 91, both hemispheres 39.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.8
Samples: 246

Max nTPM: 43.4
Min nTPM: 15.7
Std nTPM: 4.5
Median nTPM: 25.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 43.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 41.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 39.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 39.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 37.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 36.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 35.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 35.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 35.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 35.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 35.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.7
Samples: 246

Max nTPM: 60.8
Min nTPM: 17.9
Std nTPM: 6.5
Median nTPM: 28.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 60.8
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 54.3
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 51.0
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 48.3
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 47.7
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 46.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 45.7
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 45.5
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 45.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 45.1
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 44.4
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Brain - Putamen (basal ganglia)
Average nTPM: 24.4
Samples: 205

Max nTPM: 38.9
Min nTPM: 16.4
Std nTPM: 4.6
Median nTPM: 24.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 38.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 38.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 37.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 36.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 35.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 33.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 33.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 33.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 33.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 32.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 32.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 68.0
FF:10164-103B2 76 years, female 68.0
Nucleus accumbens
Scaled Tags Per Million: 48.0
FF:10037-101F1 23-56 years, mixed 48.0
Putamen
Scaled Tags Per Million: 94.5
FF:10176-103C5 60 years, female 94.5
Globus pallidus
Scaled Tags Per Million: 50.1
FF:10175-103C4 60 years, female 54.1
FF:10161-103A8 76 years, female 46.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 47.3
Pig sample Sample description nTPM
Caudate
nTPM: 42.7
Samples: 4

Max nTPM: 46.2
Min nTPM: 40.9
Sample A Female 46.2
Sample B Female 41.5
Sample C Male 42.0
Sample D Male 40.9
Putamen
nTPM: 42.3
Samples: 4

Max nTPM: 48.4
Min nTPM: 35.6
Sample A Female 35.6
Sample B Female 42.8
Sample C Male 48.4
Sample D Male 42.3
Septum
nTPM: 47.3
Samples: 4

Max nTPM: 50.0
Min nTPM: 43.6
Sample A Female 49.4
Sample B Female 46.3
Sample C Male 43.6
Sample D Male 50.0
Ventral pallidum
nTPM: 42.9
Samples: 4

Max nTPM: 47.8
Min nTPM: 37.3
Sample A Female 47.8
Sample B Female 42.1
Sample C Male 37.3
Sample D Male 44.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.6
Samples: 4

Max nTPM: 18.6
Min nTPM: 15.5
Sample A Male 18.6
Sample B Male 16.7
Sample C Female 15.5
Sample D Female 15.5
Septum
nTPM: 15.2
Samples: 4

Max nTPM: 16.1
Min nTPM: 13.9
Sample A Male 15.2
Sample B Male 15.6
Sample C Female 16.1
Sample D Female 13.9
Ventral forebrain
nTPM: 15.1
Samples: 4

Max nTPM: 15.8
Min nTPM: 14.1
Sample A Male 14.1
Sample B Male 15.2
Sample C Female 15.8
Sample D Female 15.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
532600 Antisense, RP_040810_02_E01, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 1.4
532600 Antisense, RP_040810_02_E01, Mouse strain C57BL/6J (56 days, male) 1.4

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