MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.0 nTPM
HPA Brain:39.5 nTPM
GTEx:23.0 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:39.6 nTPM
Mouse:11.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.5
1833 Male, age 53, unknown 39.3
1870 Female, age 42, unknown 36.4
1827 Male, age 72, unknown 36.1
2411 Female, age 72, unknown 35.8
1830 Male, age 51, unknown 34.7
2019 Male, age 18, unknown 33.8
2828 Female, age 72, unknown 32.9
2219 Male, age 76, both hemispheres 31.8
2666 Male, age 74, left hemisphere 30.1
2586 Male, age 75, left hemisphere 24.1
Dorsal raphe nucleus
nTPM: 35.0
2016 Female, age 72, unknown 36.9
2750 Male, age 76, both hemispheres 36.9
2047 Male, age 72, unknown 36.2
2298 Female, age 72, unknown 33.0
1828 Male, age 53, unknown 32.0
Inferior colliculus
nTPM: 36.8
2097 Female, age 72, unknown 38.1
2849 Male, age 72, unknown 37.1
1890 Male, age 53, unknown 36.0
1848 Female, age 42, unknown 35.9
Median raphe nucleus
nTPM: 37.4
2220 Male, age 76, midline 37.4
Periaquaductal grey, anterior
nTPM: 33.8
1795 Male, age 51, unknown 33.9
1947 Male, age 18, unknown 33.9
2502 Female, age 75, unknown 33.6
Periaquaductal grey, dorsal
nTPM: 36.7
2850 Male, age 76, both hemispheres 43.7
1831 Male, age 72, unknown 37.3
1840 Male, age 53, unknown 33.8
2464 Female, age 72, unknown 32.1
Periaquaductal grey, lateral
nTPM: 39.5
2053 Male, age 18, unknown 41.3
2140 Male, age 76, both hemispheres 39.0
2272 Male, age 74, both hemispheres 38.2
Pretectal area
nTPM: 36.7
2407 Male, age 75, both hemispheres 42.0
2224 Female, age 72, unknown 37.9
2316 Male, age 76, right hemisphere 37.7
1944 Female, age 72, unknown 37.3
2825 Male, age 18, unknown 37.0
2273 Male, age 74, both hemispheres 36.7
2667 Female, age 75, unknown 36.6
1817 Female, age 42, unknown 35.9
1815 Male, age 53, unknown 35.3
1816 Male, age 51, unknown 35.0
2007 Male, age 72, unknown 32.4
Red nucleus
nTPM: 33.6
2725 Female, age 75, unknown 40.9
2823 Male, age 76, right hemisphere 35.9
1865 Male, age 51, unknown 35.5
2588 Male, age 74, left hemisphere 35.2
1904 Male, age 53, unknown 35.1
1821 Female, age 72, unknown 33.7
2584 Male, age 75, left hemisphere 33.7
2503 Female, age 72, unknown 31.3
2227 Male, age 72, unknown 30.9
2785 Male, age 18, unknown 30.7
1954 Female, age 42, unknown 30.4
2769 Male, age 72, unknown 29.7
Substantia nigra
nTPM: 35.6
2241 Male, age 72, unknown 42.5
1916 Female, age 42, unknown 39.6
1941 Male, age 53, unknown 38.7
2699 Male, age 18, unknown 37.0
2583 Male, age 75, right hemisphere 35.7
1851 Male, age 51, unknown 35.1
1889 Female, age 72, unknown 33.6
2409 Female, age 72, unknown 32.5
2665 Male, age 74, both hemispheres 32.2
2590 Female, age 75, unknown 29.5
Superior colliculus
nTPM: 35.8
1895 Male, age 76, right hemisphere 42.6
2664 Male, age 75, both hemispheres 40.3
1913 Female, age 42, unknown 36.2
1995 Male, age 72, unknown 35.4
2668 Female, age 75, unknown 35.4
2087 Female, age 72, unknown 34.8
2261 Male, age 18, unknown 34.6
2587 Male, age 74, left hemisphere 33.6
1839 Male, age 51, unknown 33.5
1796 Male, age 53, unknown 31.9
Ventral tegmental area
nTPM: 33.3
2218 Male, age 76, both hemispheres 36.5
2021 Male, age 53, unknown 34.2
1942 Male, age 51, unknown 33.8
2223 Female, age 72, unknown 33.1
1915 Female, age 42, unknown 31.9
2410 Female, age 72, unknown 30.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.0
Samples: 139

Max nTPM: 43.1
Min nTPM: 13.1
Std nTPM: 4.7
Median nTPM: 22.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 43.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 38.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 37.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 37.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 35.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 34.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 32.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 31.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 31.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 30.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 29.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.5
FF:10158-103A5 76 years, female 44.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.5
Samples: 4

Max nTPM: 34.6
Min nTPM: 31.6
Sample A Female 34.6
Sample B Female 34.1
Sample C Male 33.5
Sample D Male 31.6
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 41.6
Min nTPM: 33.8
Sample A Female 33.8
Sample B Female 35.2
Sample C Male 36.2
Sample D Male 41.6
Periaqueductal gray
nTPM: 39.6
Samples: 3

Max nTPM: 40.6
Min nTPM: 38.6
Sample B Female 40.6
Sample C Male 39.6
Sample D Male 38.6
Superior colliculi
nTPM: 35.2
Samples: 4

Max nTPM: 38.2
Min nTPM: 30.9
Sample A Female 30.9
Sample B Female 35.7
Sample C Male 38.2
Sample D Male 35.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 12.6
Min nTPM: 11.5
Sample A Male 11.5
Sample B Male 11.8
Sample C Female 11.7
Sample D Female 12.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
532600 Antisense, RP_040810_02_E01, Mouse strain C57BL/6J (56 days, male) 0.5

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