MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.6 nTPM
HPA Brain:17.9 nTPM
GTEx:14.6 nTPM
FANTOM5:22.6 Scaled Tags Per Million
Pig:26.5 nTPM
Mouse:27.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.4
1870 Female, age 42, unknown 17.5
2411 Female, age 72, unknown 16.9
1827 Male, age 72, unknown 16.7
2019 Male, age 18, unknown 16.6
2219 Male, age 76, both hemispheres 15.6
2586 Male, age 75, left hemisphere 15.2
2828 Female, age 72, unknown 14.6
1830 Male, age 51, unknown 14.0
1833 Male, age 53, unknown 13.9
2666 Male, age 74, left hemisphere 12.5
Dorsal raphe nucleus
nTPM: 17.5
2298 Female, age 72, unknown 20.0
2047 Male, age 72, unknown 19.4
1828 Male, age 53, unknown 18.0
2750 Male, age 76, both hemispheres 16.5
2016 Female, age 72, unknown 13.8
Inferior colliculus
nTPM: 16.8
2097 Female, age 72, unknown 18.6
1848 Female, age 42, unknown 17.7
2849 Male, age 72, unknown 15.5
1890 Male, age 53, unknown 15.3
Median raphe nucleus
nTPM: 17.7
2220 Male, age 76, midline 17.7
Periaquaductal grey, anterior
nTPM: 17.9
2502 Female, age 75, unknown 19.1
1947 Male, age 18, unknown 18.8
1795 Male, age 51, unknown 15.9
Periaquaductal grey, dorsal
nTPM: 14.1
1840 Male, age 53, unknown 15.7
2850 Male, age 76, both hemispheres 15.6
1831 Male, age 72, unknown 13.2
2464 Female, age 72, unknown 12.0
Periaquaductal grey, lateral
nTPM: 14.4
2272 Male, age 74, both hemispheres 16.2
2140 Male, age 76, both hemispheres 14.0
2053 Male, age 18, unknown 13.1
Pretectal area
nTPM: 16.8
2007 Male, age 72, unknown 20.2
1816 Male, age 51, unknown 19.9
1944 Female, age 72, unknown 19.2
2273 Male, age 74, both hemispheres 17.5
1817 Female, age 42, unknown 17.4
2224 Female, age 72, unknown 17.2
1815 Male, age 53, unknown 15.9
2667 Female, age 75, unknown 15.8
2825 Male, age 18, unknown 15.4
2316 Male, age 76, right hemisphere 13.2
2407 Male, age 75, both hemispheres 12.8
Red nucleus
nTPM: 14.4
1821 Female, age 72, unknown 17.9
2785 Male, age 18, unknown 16.1
1954 Female, age 42, unknown 15.5
2227 Male, age 72, unknown 15.0
2725 Female, age 75, unknown 14.9
2769 Male, age 72, unknown 14.4
2584 Male, age 75, left hemisphere 13.8
2503 Female, age 72, unknown 13.6
1904 Male, age 53, unknown 13.5
2588 Male, age 74, left hemisphere 12.8
1865 Male, age 51, unknown 12.7
2823 Male, age 76, right hemisphere 12.5
Substantia nigra
nTPM: 16.2
1916 Female, age 42, unknown 20.7
1941 Male, age 53, unknown 20.2
1889 Female, age 72, unknown 17.8
2665 Male, age 74, both hemispheres 17.7
1851 Male, age 51, unknown 16.7
2241 Male, age 72, unknown 16.6
2590 Female, age 75, unknown 14.3
2409 Female, age 72, unknown 13.9
2699 Male, age 18, unknown 13.4
2583 Male, age 75, right hemisphere 11.2
Superior colliculus
nTPM: 14.7
1895 Male, age 76, right hemisphere 18.6
1796 Male, age 53, unknown 16.6
2261 Male, age 18, unknown 15.9
1839 Male, age 51, unknown 15.8
2087 Female, age 72, unknown 15.5
2668 Female, age 75, unknown 15.4
2664 Male, age 75, both hemispheres 14.4
2587 Male, age 74, left hemisphere 13.5
1913 Female, age 42, unknown 11.5
1995 Male, age 72, unknown 10.2
Ventral tegmental area
nTPM: 16.3
2218 Male, age 76, both hemispheres 18.3
1915 Female, age 42, unknown 17.8
1942 Male, age 51, unknown 16.7
2410 Female, age 72, unknown 16.5
2223 Female, age 72, unknown 15.7
2021 Male, age 53, unknown 13.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.6
Samples: 139

Max nTPM: 39.2
Min nTPM: 6.5
Std nTPM: 5.5
Median nTPM: 12.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 39.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 35.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 29.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 28.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 28.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 28.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 25.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 23.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 22.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 21.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 21.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.6
FF:10158-103A5 76 years, female 22.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.8
Samples: 4

Max nTPM: 29.8
Min nTPM: 10.1
Sample A Female 29.8
Sample B Female 16.2
Sample C Male 27.1
Sample D Male 10.1
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 37.5
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 21.8
Sample C Male 31.9
Sample D Male 37.5
Periaqueductal gray
nTPM: 22.2
Samples: 3

Max nTPM: 27.0
Min nTPM: 18.3
Sample B Female 21.4
Sample C Male 27.0
Sample D Male 18.3
Superior colliculi
nTPM: 26.6
Samples: 4

Max nTPM: 32.7
Min nTPM: 17.5
Sample A Female 32.7
Sample B Female 17.5
Sample C Male 31.4
Sample D Male 24.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 28.3
Min nTPM: 25.7
Sample A Male 28.0
Sample B Male 27.5
Sample C Female 28.3
Sample D Female 25.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70723381 Antisense, RP_050705_01_A08, Mouse strain C57BL/6J (56 days, male) 0.1

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