MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.9 nTPM
HPA Brain:1.2 nTPM
GTEx:0.9 nTPM
FANTOM5:7.3 Scaled Tags Per Million
Pig:32.7 nTPM
Mouse:0.7 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.9
2666 Male, age 74, left hemisphere 1.3
2019 Male, age 18, unknown 1.1
2586 Male, age 75, left hemisphere 1.1
1830 Male, age 51, unknown 0.9
1833 Male, age 53, unknown 0.9
1870 Female, age 42, unknown 0.9
2828 Female, age 72, unknown 0.9
2411 Female, age 72, unknown 0.7
2219 Male, age 76, both hemispheres 0.6
1827 Male, age 72, unknown 0.5
Dorsal raphe nucleus
nTPM: 0.8
2750 Male, age 76, both hemispheres 1.1
2047 Male, age 72, unknown 0.9
1828 Male, age 53, unknown 0.7
2016 Female, age 72, unknown 0.7
2298 Female, age 72, unknown 0.5
Inferior colliculus
nTPM: 1.0
1890 Male, age 53, unknown 2.4
1848 Female, age 42, unknown 0.6
2097 Female, age 72, unknown 0.5
2849 Male, age 72, unknown 0.5
Median raphe nucleus
nTPM: 1.2
2220 Male, age 76, midline 1.2
Periaquaductal grey, anterior
nTPM: 0.7
1947 Male, age 18, unknown 0.8
1795 Male, age 51, unknown 0.7
2502 Female, age 75, unknown 0.7
Periaquaductal grey, dorsal
nTPM: 0.8
1831 Male, age 72, unknown 1.1
2464 Female, age 72, unknown 0.9
2850 Male, age 76, both hemispheres 0.6
1840 Male, age 53, unknown 0.4
Periaquaductal grey, lateral
nTPM: 0.8
2140 Male, age 76, both hemispheres 1.2
2272 Male, age 74, both hemispheres 0.8
2053 Male, age 18, unknown 0.5
Pretectal area
nTPM: 0.7
1817 Female, age 42, unknown 0.9
1944 Female, age 72, unknown 0.9
2007 Male, age 72, unknown 0.8
2224 Female, age 72, unknown 0.8
2316 Male, age 76, right hemisphere 0.8
1815 Male, age 53, unknown 0.7
2667 Female, age 75, unknown 0.7
1816 Male, age 51, unknown 0.5
2825 Male, age 18, unknown 0.5
2273 Male, age 74, both hemispheres 0.3
2407 Male, age 75, both hemispheres 0.3
Red nucleus
nTPM: 1.2
2588 Male, age 74, left hemisphere 1.5
2823 Male, age 76, right hemisphere 1.5
2227 Male, age 72, unknown 1.4
2769 Male, age 72, unknown 1.4
1954 Female, age 42, unknown 1.2
2584 Male, age 75, left hemisphere 1.2
2785 Male, age 18, unknown 1.2
1904 Male, age 53, unknown 1.1
1821 Female, age 72, unknown 1.0
2503 Female, age 72, unknown 1.0
1865 Male, age 51, unknown 0.8
2725 Female, age 75, unknown 0.6
Substantia nigra
nTPM: 0.7
2665 Male, age 74, both hemispheres 1.7
2590 Female, age 75, unknown 1.0
1851 Male, age 51, unknown 0.9
2699 Male, age 18, unknown 0.8
2583 Male, age 75, right hemisphere 0.7
1889 Female, age 72, unknown 0.6
1916 Female, age 42, unknown 0.6
1941 Male, age 53, unknown 0.6
2241 Male, age 72, unknown 0.3
2409 Female, age 72, unknown 0.2
Superior colliculus
nTPM: 0.8
2087 Female, age 72, unknown 1.0
2668 Female, age 75, unknown 1.0
1995 Male, age 72, unknown 0.9
1839 Male, age 51, unknown 0.8
1913 Female, age 42, unknown 0.8
2261 Male, age 18, unknown 0.8
2587 Male, age 74, left hemisphere 0.8
1895 Male, age 76, right hemisphere 0.7
1796 Male, age 53, unknown 0.5
2664 Male, age 75, both hemispheres 0.5
Ventral tegmental area
nTPM: 1.2
1915 Female, age 42, unknown 1.8
1942 Male, age 51, unknown 1.5
2223 Female, age 72, unknown 1.1
2218 Male, age 76, both hemispheres 1.0
2021 Male, age 53, unknown 0.9
2410 Female, age 72, unknown 0.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.9
Samples: 139

Max nTPM: 17.1
Min nTPM: 0.0
Std nTPM: 1.4
Median nTPM: 0.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 17.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 3.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 2.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 2.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 1.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.3
FF:10158-103A5 76 years, female 7.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.3
Samples: 4

Max nTPM: 25.4
Min nTPM: 3.1
Sample A Female 4.5
Sample B Female 25.4
Sample C Male 3.1
Sample D Male 4.1
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.4
Sample A Female 3.7
Sample B Female 2.1
Sample C Male 3.7
Sample D Male 1.4
Periaqueductal gray
nTPM: 0.5
Samples: 3

Max nTPM: 0.7
Min nTPM: 0.3
Sample B Female 0.7
Sample C Male 0.4
Sample D Male 0.3
Superior colliculi
nTPM: 32.7
Samples: 4

Max nTPM: 98.9
Min nTPM: 2.1
Sample A Female 26.0
Sample B Female 98.9
Sample C Male 2.1
Sample D Male 3.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.6
Sample A Male 0.8
Sample B Male 0.6
Sample C Female 0.6
Sample D Female 0.7

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