HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.4 nTPM
HPA Brain:11.9 nTPM
GTEx:15.4 nTPM
FANTOM5:5.9 Scaled Tags Per Million
Pig:15.9 nTPM
Mouse:12.5 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023792
Glial cells Low
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 11.9
Sample id Sample description nTPM
Hippocampus
nTPM: 8.5
1898 Male, age 80, left hemisphere 10.7
2529 Female, age 94, left hemisphere 9.7
1911 Female, age 85, right hemisphere 8.4
1855 Male, age 76, left hemisphere 8.0
2621 Female, age 67, right hemisphere 7.1
2148 Female, age 91, left hemisphere 6.9
Dentate gyrus
nTPM: 7.8
2010 Male, age 76, both hemispheres 9.9
2530 Female, age 94, left hemisphere 9.8
2528 Male, age 74, both hemispheres 8.3
2246 Female, age 85, both hemispheres 6.4
2531 Female, age 67, both hemispheres 6.2
1927 Female, age 91, both hemispheres 6.1
Entorhinal gyrus
nTPM: 9.3
2117 Female, age 91, right hemisphere 11.3
1787 Male, age 76, left hemisphere 11.1
2686 Male, age 75, right hemisphere 10.3
2764 Male, age 80, right hemisphere 8.9
2613 Female, age 94, left hemisphere 7.1
1938 Female, age 85, left hemisphere 6.9
Hippocampus, CA1
nTPM: 7.5
1873 Female, age 85, both hemispheres 9.2
2527 Male, age 74, both hemispheres 7.8
2082 Female, age 91, right hemisphere 7.2
2045 Male, age 76, both hemispheres 6.8
2749 Male, age 80, left hemisphere 6.4
Hippocampus, CA2
nTPM: 8.8
2249 Male, age 74, both hemispheres 14.0
1940 Female, age 85, left hemisphere 11.5
2437 Female, age 94, left hemisphere 8.6
2113 Female, age 91, right hemisphere 6.6
1963 Male, age 80, left hemisphere 6.2
1892 Male, age 76, both hemispheres 5.8
Hippocampus, CA3
nTPM: 11.9
2436 Male, age 74, both hemispheres 32.5
1867 Male, age 76, both hemispheres 10.5
2861 Female, age 67, both hemispheres 8.5
2137 Male, age 80, left hemisphere 7.6
1891 Female, age 85, both hemispheres 6.3
2620 Female, age 94, left hemisphere 6.2
Parahippocampal cortex
nTPM: 7.1
2250 Female, age 67, right hemisphere 10.8
2018 Male, age 76, both hemispheres 10.3
1990 Female, age 91, right hemisphere 8.7
2622 Female, age 67, right hemisphere 8.1
1933 Female, age 85, both hemispheres 7.3
2245 Female, age 91, both hemispheres 6.1
1850 Male, age 80, both hemispheres 5.6
2693 Female, age 94, both hemispheres 5.3
2532 Female, age 72, left hemisphere 4.8
2692 Male, age 74, both hemispheres 4.2
Perirhinal gyrus
nTPM: 6.8
2521 Female, age 94, right hemisphere 7.9
1847 Female, age 91, left hemisphere 7.2
1794 Male, age 80, right hemisphere 6.7
1841 Female, age 85, right hemisphere 6.7
2848 Male, age 76, right hemisphere 5.6
Subiculum
nTPM: 8.2
1977 Female, age 85, both hemispheres 12.5
2042 Male, age 76, both hemispheres 10.0
2729 Female, age 91, right hemisphere 8.6
2619 Male, age 74, both hemispheres 7.9
1901 Male, age 80, both hemispheres 6.8
2438 Female, age 94, left hemisphere 3.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.4
Samples: 197

Max nTPM: 111.4
Min nTPM: 4.9
Std nTPM: 10.4
Median nTPM: 13.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 111.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 55.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 52.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 51.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 44.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 43.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 37.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 33.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 31.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 28.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 26.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5.9
FF:10153-102I9 76 years, female 7.8
FF:10169-103B7 60 years, female 4.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.9
Pig sample Sample description nTPM
Subiculum
nTPM: 10.0
Samples: 4

Max nTPM: 15.6
Min nTPM: 6.8
Sample A Female 15.6
Sample B Female 6.8
Sample C Male 7.2
Sample D Male 10.2
Dorsal hippocampus
nTPM: 8.4
Samples: 4

Max nTPM: 12.7
Min nTPM: 5.5
Sample A Female 8.6
Sample B Female 6.8
Sample C Male 12.7
Sample D Male 5.5
Entorhinal cortex
nTPM: 15.9
Samples: 4

Max nTPM: 20.4
Min nTPM: 13.1
Sample A Female 15.8
Sample B Female 20.4
Sample C Male 13.1
Sample D Male 14.4
Ventral hippocampus
nTPM: 9.9
Samples: 4

Max nTPM: 14.7
Min nTPM: 6.3
Sample A Female 11.6
Sample B Female 7.0
Sample C Male 14.7
Sample D Male 6.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.3
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.0
Sample A Male 11.0
Sample B Male 13.4
Sample C Female 12.2
Sample D Female 12.4
Hippocampal formation
nTPM: 12.5
Samples: 4

Max nTPM: 15.7
Min nTPM: 10.5
Sample A Male 13.0
Sample B Male 10.5
Sample C Female 10.6
Sample D Female 15.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
68633363 Antisense, RP_050125_02_G03, Mouse strain C57BL/6J (56 days, male) 1.2

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