MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:17.5 nTPM
GTEx:16.1 nTPM
FANTOM5:6.1 Scaled Tags Per Million
Pig:35.5 nTPM
Mouse:13.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.8
2586 Male, age 75, left hemisphere 18.1
2019 Male, age 18, unknown 14.5
2828 Female, age 72, unknown 13.6
1827 Male, age 72, unknown 12.3
2666 Male, age 74, left hemisphere 10.2
2411 Female, age 72, unknown 9.5
1833 Male, age 53, unknown 9.4
1830 Male, age 51, unknown 7.6
1870 Female, age 42, unknown 6.9
2219 Male, age 76, both hemispheres 5.9
Dorsal raphe nucleus
nTPM: 10.7
2298 Female, age 72, unknown 14.8
1828 Male, age 53, unknown 13.2
2750 Male, age 76, both hemispheres 9.2
2016 Female, age 72, unknown 8.6
2047 Male, age 72, unknown 7.5
Inferior colliculus
nTPM: 6.4
1890 Male, age 53, unknown 8.0
1848 Female, age 42, unknown 6.6
2097 Female, age 72, unknown 6.2
2849 Male, age 72, unknown 5.0
Median raphe nucleus
nTPM: 9.1
2220 Male, age 76, midline 9.1
Periaquaductal grey, anterior
nTPM: 12.4
1795 Male, age 51, unknown 14.8
1947 Male, age 18, unknown 13.1
2502 Female, age 75, unknown 9.4
Periaquaductal grey, dorsal
nTPM: 10.0
1831 Male, age 72, unknown 14.1
2850 Male, age 76, both hemispheres 10.5
1840 Male, age 53, unknown 7.7
2464 Female, age 72, unknown 7.5
Periaquaductal grey, lateral
nTPM: 11.3
2272 Male, age 74, both hemispheres 14.9
2140 Male, age 76, both hemispheres 11.2
2053 Male, age 18, unknown 7.8
Pretectal area
nTPM: 17.5
1816 Male, age 51, unknown 33.7
1815 Male, age 53, unknown 27.1
2007 Male, age 72, unknown 27.1
1817 Female, age 42, unknown 24.6
1944 Female, age 72, unknown 23.7
2273 Male, age 74, both hemispheres 14.0
2407 Male, age 75, both hemispheres 10.6
2667 Female, age 75, unknown 10.4
2316 Male, age 76, right hemisphere 8.4
2224 Female, age 72, unknown 7.2
2825 Male, age 18, unknown 6.0
Red nucleus
nTPM: 10.9
2588 Male, age 74, left hemisphere 15.5
2785 Male, age 18, unknown 14.0
1904 Male, age 53, unknown 13.3
1954 Female, age 42, unknown 13.1
2725 Female, age 75, unknown 11.9
2584 Male, age 75, left hemisphere 11.7
2503 Female, age 72, unknown 11.1
1865 Male, age 51, unknown 9.6
2227 Male, age 72, unknown 8.7
2823 Male, age 76, right hemisphere 8.4
1821 Female, age 72, unknown 7.3
2769 Male, age 72, unknown 6.6
Substantia nigra
nTPM: 9.7
1889 Female, age 72, unknown 15.1
2583 Male, age 75, right hemisphere 14.5
2409 Female, age 72, unknown 11.8
2590 Female, age 75, unknown 11.5
2699 Male, age 18, unknown 10.3
2665 Male, age 74, both hemispheres 10.1
1851 Male, age 51, unknown 7.2
2241 Male, age 72, unknown 7.0
1916 Female, age 42, unknown 6.4
1941 Male, age 53, unknown 3.1
Superior colliculus
nTPM: 13.6
2087 Female, age 72, unknown 19.4
2261 Male, age 18, unknown 18.8
1796 Male, age 53, unknown 17.5
1995 Male, age 72, unknown 16.8
2668 Female, age 75, unknown 16.7
1913 Female, age 42, unknown 13.5
2664 Male, age 75, both hemispheres 11.0
2587 Male, age 74, left hemisphere 9.1
1839 Male, age 51, unknown 6.7
1895 Male, age 76, right hemisphere 6.2
Ventral tegmental area
nTPM: 7.3
2218 Male, age 76, both hemispheres 9.1
1942 Male, age 51, unknown 8.8
1915 Female, age 42, unknown 8.0
2410 Female, age 72, unknown 7.7
2223 Female, age 72, unknown 5.3
2021 Male, age 53, unknown 4.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 139

Max nTPM: 45.2
Min nTPM: 1.6
Std nTPM: 8.6
Median nTPM: 14.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 45.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 43.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 42.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 41.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 40.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 37.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 36.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 33.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 32.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 31.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.1
FF:10158-103A5 76 years, female 6.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.1
Samples: 4

Max nTPM: 26.5
Min nTPM: 12.2
Sample A Female 23.4
Sample B Female 26.5
Sample C Male 14.2
Sample D Male 12.2
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 21.3
Min nTPM: 14.6
Sample A Female 14.6
Sample B Female 18.7
Sample C Male 20.5
Sample D Male 21.3
Periaqueductal gray
nTPM: 16.3
Samples: 3

Max nTPM: 18.8
Min nTPM: 12.9
Sample B Female 18.8
Sample C Male 17.2
Sample D Male 12.9
Superior colliculi
nTPM: 35.5
Samples: 4

Max nTPM: 47.7
Min nTPM: 22.1
Sample A Female 47.7
Sample B Female 44.3
Sample C Male 27.9
Sample D Male 22.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.6
Sample A Male 12.6
Sample B Male 13.4
Sample C Female 13.5
Sample D Female 15.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68633363 Antisense, RP_050125_02_G03, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org