MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:115.8 nTPM
HPA Brain:96.7 nTPM
GTEx:115.8 nTPM
FANTOM5:246.4 Scaled Tags Per Million
Pig:87.0 nTPM
Mouse:166.6 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 96.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.2
2411 Female, age 72, unknown 115.4
1833 Male, age 53, unknown 100.1
1870 Female, age 42, unknown 99.9
2019 Male, age 18, unknown 94.2
1830 Male, age 51, unknown 93.5
2828 Female, age 72, unknown 82.8
1827 Male, age 72, unknown 72.2
2219 Male, age 76, both hemispheres 71.3
2586 Male, age 75, left hemisphere 60.1
2666 Male, age 74, left hemisphere 52.5
Dorsal raphe nucleus
nTPM: 85.9
2750 Male, age 76, both hemispheres 122.4
2298 Female, age 72, unknown 82.9
1828 Male, age 53, unknown 75.7
2047 Male, age 72, unknown 75.1
2016 Female, age 72, unknown 73.5
Inferior colliculus
nTPM: 65.7
1848 Female, age 42, unknown 68.8
2097 Female, age 72, unknown 67.4
1890 Male, age 53, unknown 65.0
2849 Male, age 72, unknown 61.6
Median raphe nucleus
nTPM: 84.6
2220 Male, age 76, midline 84.6
Periaquaductal grey, anterior
nTPM: 68.1
2502 Female, age 75, unknown 71.7
1947 Male, age 18, unknown 69.0
1795 Male, age 51, unknown 63.5
Periaquaductal grey, dorsal
nTPM: 62.6
2464 Female, age 72, unknown 72.1
2850 Male, age 76, both hemispheres 65.4
1831 Male, age 72, unknown 59.7
1840 Male, age 53, unknown 53.1
Periaquaductal grey, lateral
nTPM: 70.7
2272 Male, age 74, both hemispheres 85.4
2053 Male, age 18, unknown 64.9
2140 Male, age 76, both hemispheres 61.7
Pretectal area
nTPM: 72.7
2273 Male, age 74, both hemispheres 91.1
2667 Female, age 75, unknown 86.1
2316 Male, age 76, right hemisphere 79.4
1815 Male, age 53, unknown 74.3
1817 Female, age 42, unknown 72.2
2007 Male, age 72, unknown 70.8
2407 Male, age 75, both hemispheres 70.8
2224 Female, age 72, unknown 70.5
2825 Male, age 18, unknown 67.3
1944 Female, age 72, unknown 61.3
1816 Male, age 51, unknown 56.3
Red nucleus
nTPM: 96.7
1904 Male, age 53, unknown 115.6
1865 Male, age 51, unknown 113.3
1821 Female, age 72, unknown 112.8
2769 Male, age 72, unknown 105.7
2227 Male, age 72, unknown 104.3
2823 Male, age 76, right hemisphere 102.3
2785 Male, age 18, unknown 97.5
1954 Female, age 42, unknown 95.9
2503 Female, age 72, unknown 95.9
2725 Female, age 75, unknown 78.5
2588 Male, age 74, left hemisphere 75.1
2584 Male, age 75, left hemisphere 63.0
Substantia nigra
nTPM: 83.9
1916 Female, age 42, unknown 103.8
1851 Male, age 51, unknown 103.1
2699 Male, age 18, unknown 90.3
2409 Female, age 72, unknown 87.0
2590 Female, age 75, unknown 86.3
2241 Male, age 72, unknown 81.3
1941 Male, age 53, unknown 78.2
1889 Female, age 72, unknown 77.2
2583 Male, age 75, right hemisphere 74.3
2665 Male, age 74, both hemispheres 57.6
Superior colliculus
nTPM: 74.0
1913 Female, age 42, unknown 95.9
1995 Male, age 72, unknown 88.0
2587 Male, age 74, left hemisphere 87.7
1796 Male, age 53, unknown 77.1
1895 Male, age 76, right hemisphere 73.1
1839 Male, age 51, unknown 69.9
2668 Female, age 75, unknown 67.5
2261 Male, age 18, unknown 64.7
2087 Female, age 72, unknown 63.6
2664 Male, age 75, both hemispheres 52.8
Ventral tegmental area
nTPM: 92.2
2410 Female, age 72, unknown 112.9
2223 Female, age 72, unknown 104.6
1915 Female, age 42, unknown 91.9
2218 Male, age 76, both hemispheres 87.6
2021 Male, age 53, unknown 78.9
1942 Male, age 51, unknown 77.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 115.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 115.8
Samples: 139

Max nTPM: 235.6
Min nTPM: 61.9
Std nTPM: 31.6
Median nTPM: 107.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 235.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 233.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 231.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 209.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 198.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 195.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 192.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 179.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 172.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 172.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 171.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 246.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 246.4
FF:10158-103A5 76 years, female 246.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.7
Samples: 4

Max nTPM: 99.3
Min nTPM: 78.3
Sample A Female 99.3
Sample B Female 80.7
Sample C Male 78.3
Sample D Male 84.3
Midbrain
nTPM: 87.0
Samples: 4

Max nTPM: 152.9
Min nTPM: 55.4
Sample A Female 152.9
Sample B Female 73.1
Sample C Male 66.7
Sample D Male 55.4
Periaqueductal gray
nTPM: 67.5
Samples: 3

Max nTPM: 72.0
Min nTPM: 62.7
Sample B Female 67.9
Sample C Male 72.0
Sample D Male 62.7
Superior colliculi
nTPM: 77.5
Samples: 4

Max nTPM: 89.3
Min nTPM: 70.9
Sample A Female 89.3
Sample B Female 76.4
Sample C Male 73.2
Sample D Male 70.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 166.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 166.6
Samples: 4

Max nTPM: 181.4
Min nTPM: 150.4
Sample A Male 169.1
Sample B Male 150.4
Sample C Female 165.6
Sample D Female 181.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
70474035 Antisense, RP_050614_04_G06, Mouse strain C57BL/6J (56 days, male) 4.8
74988562 Antisense, RP_060315_05_F01, Mouse strain C57BL/6J (56 days, male) 3.2

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