MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.4 nTPM
HPA Brain:116.5 nTPM
GTEx:3.4 nTPM
FANTOM5:102.9 Scaled Tags Per Million
Pig:50.9 nTPM
Mouse:9.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 116.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.9
2666 Male, age 74, left hemisphere 120.2
1833 Male, age 53, unknown 103.4
1830 Male, age 51, unknown 102.5
2219 Male, age 76, both hemispheres 102.1
2828 Female, age 72, unknown 98.3
1870 Female, age 42, unknown 94.6
2586 Male, age 75, left hemisphere 93.7
1827 Male, age 72, unknown 91.2
2411 Female, age 72, unknown 90.0
2019 Male, age 18, unknown 82.8
Dorsal raphe nucleus
nTPM: 92.5
2750 Male, age 76, both hemispheres 103.6
2047 Male, age 72, unknown 98.0
1828 Male, age 53, unknown 92.4
2016 Female, age 72, unknown 91.7
2298 Female, age 72, unknown 76.6
Inferior colliculus
nTPM: 96.8
1890 Male, age 53, unknown 101.8
2849 Male, age 72, unknown 100.2
1848 Female, age 42, unknown 99.0
2097 Female, age 72, unknown 86.2
Median raphe nucleus
nTPM: 96.6
2220 Male, age 76, midline 96.6
Periaquaductal grey, anterior
nTPM: 96.7
1947 Male, age 18, unknown 103.1
2502 Female, age 75, unknown 102.2
1795 Male, age 51, unknown 84.8
Periaquaductal grey, dorsal
nTPM: 90.4
1840 Male, age 53, unknown 95.1
2464 Female, age 72, unknown 94.3
1831 Male, age 72, unknown 89.3
2850 Male, age 76, both hemispheres 82.9
Periaquaductal grey, lateral
nTPM: 79.2
2053 Male, age 18, unknown 89.7
2140 Male, age 76, both hemispheres 81.1
2272 Male, age 74, both hemispheres 66.9
Pretectal area
nTPM: 88.6
1944 Female, age 72, unknown 98.9
1815 Male, age 53, unknown 97.7
2825 Male, age 18, unknown 96.2
1817 Female, age 42, unknown 93.5
1816 Male, age 51, unknown 92.9
2007 Male, age 72, unknown 92.4
2316 Male, age 76, right hemisphere 87.7
2224 Female, age 72, unknown 84.2
2407 Male, age 75, both hemispheres 81.8
2667 Female, age 75, unknown 81.7
2273 Male, age 74, both hemispheres 67.5
Red nucleus
nTPM: 101.2
2503 Female, age 72, unknown 125.0
2588 Male, age 74, left hemisphere 111.8
1865 Male, age 51, unknown 107.1
1821 Female, age 72, unknown 107.0
1954 Female, age 42, unknown 100.0
2725 Female, age 75, unknown 98.7
1904 Male, age 53, unknown 98.2
2584 Male, age 75, left hemisphere 98.2
2823 Male, age 76, right hemisphere 95.3
2769 Male, age 72, unknown 94.5
2227 Male, age 72, unknown 91.1
2785 Male, age 18, unknown 88.0
Substantia nigra
nTPM: 116.5
2241 Male, age 72, unknown 144.8
2665 Male, age 74, both hemispheres 138.8
2409 Female, age 72, unknown 118.9
1916 Female, age 42, unknown 118.4
2699 Male, age 18, unknown 116.2
1851 Male, age 51, unknown 114.6
2590 Female, age 75, unknown 106.2
1941 Male, age 53, unknown 103.3
2583 Male, age 75, right hemisphere 102.6
1889 Female, age 72, unknown 101.2
Superior colliculus
nTPM: 93.6
2668 Female, age 75, unknown 105.6
2587 Male, age 74, left hemisphere 101.3
1895 Male, age 76, right hemisphere 97.3
2261 Male, age 18, unknown 94.1
1796 Male, age 53, unknown 93.8
1839 Male, age 51, unknown 92.8
1913 Female, age 42, unknown 92.6
2087 Female, age 72, unknown 90.8
2664 Male, age 75, both hemispheres 85.9
1995 Male, age 72, unknown 82.0
Ventral tegmental area
nTPM: 98.6
2410 Female, age 72, unknown 112.9
1915 Female, age 42, unknown 102.3
2218 Male, age 76, both hemispheres 102.1
1942 Male, age 51, unknown 96.2
2223 Female, age 72, unknown 92.5
2021 Male, age 53, unknown 85.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.4
Samples: 139

Max nTPM: 5.2
Min nTPM: 1.5
Std nTPM: 0.7
Median nTPM: 3.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 5.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 5.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 4.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 4.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 4.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 4.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 4.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 4.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 4.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 4.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.9
FF:10158-103A5 76 years, female 102.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.6
Samples: 4

Max nTPM: 53.1
Min nTPM: 47.6
Sample A Female 53.1
Sample B Female 50.1
Sample C Male 51.4
Sample D Male 47.6
Midbrain
nTPM: 50.9
Samples: 4

Max nTPM: 58.2
Min nTPM: 41.2
Sample A Female 41.2
Sample B Female 58.2
Sample C Male 51.3
Sample D Male 52.8
Periaqueductal gray
nTPM: 47.1
Samples: 3

Max nTPM: 52.2
Min nTPM: 44.6
Sample B Female 52.2
Sample C Male 44.6
Sample D Male 44.6
Superior colliculi
nTPM: 50.3
Samples: 4

Max nTPM: 51.8
Min nTPM: 48.7
Sample A Female 49.2
Sample B Female 48.7
Sample C Male 51.3
Sample D Male 51.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 10.8
Min nTPM: 7.5
Sample A Male 7.5
Sample B Male 10.8
Sample C Female 10.3
Sample D Female 9.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69548915 Antisense, RP_050426_02_E06, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org